Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3192 and EX28DRAFT_3193 are separated by 12 nucleotides EX28DRAFT_3193 and EX28DRAFT_3194 are separated by 20 nucleotides
EX28DRAFT_3192: EX28DRAFT_3192 - putative sugar isomerase, AgaS family, at 492,389 to 493,537
_3192
EX28DRAFT_3193: EX28DRAFT_3193 - class II aldolase, tagatose bisphosphate family, at 493,550 to 494,422
_3193
EX28DRAFT_3194: EX28DRAFT_3194 - hypothetical protein, at 494,443 to 496,332
_3194
Position (kb) 493
494
495 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 492.675 kb on - strand, within EX28DRAFT_3192 at 492.782 kb on + strand, within EX28DRAFT_3192 at 492.796 kb on + strand, within EX28DRAFT_3192 at 492.796 kb on + strand, within EX28DRAFT_3192 at 492.821 kb on + strand, within EX28DRAFT_3192 at 493.067 kb on + strand, within EX28DRAFT_3192 at 493.067 kb on + strand, within EX28DRAFT_3192 at 493.155 kb on - strand, within EX28DRAFT_3192 at 493.226 kb on - strand, within EX28DRAFT_3192 at 493.243 kb on + strand, within EX28DRAFT_3192 at 493.244 kb on - strand, within EX28DRAFT_3192 at 493.253 kb on + strand, within EX28DRAFT_3192 at 493.415 kb on + strand, within EX28DRAFT_3192 at 493.416 kb on - strand, within EX28DRAFT_3192 at 493.416 kb on - strand, within EX28DRAFT_3192 at 493.452 kb on + strand at 493.459 kb on + strand at 493.535 kb on + strand at 493.549 kb on + strand at 493.550 kb on - strand at 493.550 kb on - strand at 493.555 kb on + strand at 493.555 kb on + strand at 493.555 kb on + strand at 493.556 kb on - strand at 493.558 kb on + strand at 493.558 kb on + strand at 493.559 kb on - strand at 493.571 kb on + strand at 493.572 kb on - strand at 493.572 kb on - strand at 493.712 kb on - strand, within EX28DRAFT_3193 at 493.718 kb on - strand, within EX28DRAFT_3193 at 493.718 kb on - strand, within EX28DRAFT_3193 at 493.736 kb on + strand, within EX28DRAFT_3193 at 493.736 kb on + strand, within EX28DRAFT_3193 at 493.736 kb on + strand, within EX28DRAFT_3193 at 494.099 kb on - strand, within EX28DRAFT_3193 at 494.324 kb on + strand, within EX28DRAFT_3193 at 494.324 kb on + strand, within EX28DRAFT_3193 at 494.324 kb on + strand, within EX28DRAFT_3193 at 494.324 kb on + strand, within EX28DRAFT_3193 at 494.324 kb on + strand, within EX28DRAFT_3193 at 494.325 kb on - strand, within EX28DRAFT_3193 at 494.325 kb on - strand, within EX28DRAFT_3193 at 494.325 kb on - strand, within EX28DRAFT_3193 at 494.436 kb on + strand at 494.436 kb on + strand at 494.529 kb on + strand at 494.530 kb on - strand at 494.587 kb on - strand at 494.729 kb on + strand, within EX28DRAFT_3194 at 494.761 kb on + strand, within EX28DRAFT_3194 at 494.761 kb on + strand, within EX28DRAFT_3194 at 494.761 kb on + strand, within EX28DRAFT_3194 at 494.761 kb on + strand, within EX28DRAFT_3194 at 494.762 kb on - strand, within EX28DRAFT_3194 at 494.777 kb on - strand, within EX28DRAFT_3194 at 494.821 kb on - strand, within EX28DRAFT_3194 at 494.857 kb on + strand, within EX28DRAFT_3194 at 494.858 kb on - strand, within EX28DRAFT_3194 at 494.858 kb on - strand, within EX28DRAFT_3194 at 494.862 kb on - strand, within EX28DRAFT_3194 at 494.938 kb on + strand, within EX28DRAFT_3194 at 494.938 kb on + strand, within EX28DRAFT_3194 at 494.938 kb on + strand, within EX28DRAFT_3194 at 494.939 kb on - strand, within EX28DRAFT_3194 at 494.939 kb on - strand, within EX28DRAFT_3194 at 494.939 kb on - strand, within EX28DRAFT_3194 at 494.970 kb on - strand, within EX28DRAFT_3194 at 494.970 kb on - strand, within EX28DRAFT_3194 at 494.970 kb on - strand, within EX28DRAFT_3194 at 494.970 kb on - strand, within EX28DRAFT_3194 at 495.012 kb on + strand, within EX28DRAFT_3194 at 495.099 kb on + strand, within EX28DRAFT_3194 at 495.099 kb on + strand, within EX28DRAFT_3194 at 495.100 kb on - strand, within EX28DRAFT_3194 at 495.100 kb on - strand, within EX28DRAFT_3194 at 495.106 kb on + strand, within EX28DRAFT_3194 at 495.106 kb on + strand, within EX28DRAFT_3194 at 495.110 kb on + strand, within EX28DRAFT_3194 at 495.111 kb on - strand, within EX28DRAFT_3194 at 495.193 kb on - strand, within EX28DRAFT_3194 at 495.373 kb on + strand, within EX28DRAFT_3194 at 495.375 kb on + strand, within EX28DRAFT_3194 at 495.376 kb on - strand, within EX28DRAFT_3194
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 492,675 - EX28DRAFT_3192 0.25 -2.6 492,782 + EX28DRAFT_3192 0.34 -0.7 492,796 + EX28DRAFT_3192 0.35 -0.2 492,796 + EX28DRAFT_3192 0.35 -4.9 492,821 + EX28DRAFT_3192 0.38 -1.0 493,067 + EX28DRAFT_3192 0.59 -0.1 493,067 + EX28DRAFT_3192 0.59 +0.3 493,155 - EX28DRAFT_3192 0.67 +1.0 493,226 - EX28DRAFT_3192 0.73 -0.9 493,243 + EX28DRAFT_3192 0.74 +2.0 493,244 - EX28DRAFT_3192 0.74 -1.3 493,253 + EX28DRAFT_3192 0.75 +0.5 493,415 + EX28DRAFT_3192 0.89 -1.2 493,416 - EX28DRAFT_3192 0.89 -1.5 493,416 - EX28DRAFT_3192 0.89 -1.8 493,452 + +1.2 493,459 + -0.1 493,535 + -0.4 493,549 + +0.1 493,550 - +2.5 493,550 - +0.9 493,555 + -0.0 493,555 + +1.4 493,555 + -1.2 493,556 - +0.8 493,558 + +1.1 493,558 + +2.3 493,559 - -0.3 493,571 + -1.8 493,572 - -1.1 493,572 - -0.2 493,712 - EX28DRAFT_3193 0.19 +1.8 493,718 - EX28DRAFT_3193 0.19 -2.4 493,718 - EX28DRAFT_3193 0.19 -0.7 493,736 + EX28DRAFT_3193 0.21 +1.3 493,736 + EX28DRAFT_3193 0.21 +0.4 493,736 + EX28DRAFT_3193 0.21 +1.0 494,099 - EX28DRAFT_3193 0.63 -0.2 494,324 + EX28DRAFT_3193 0.89 +1.2 494,324 + EX28DRAFT_3193 0.89 +3.4 494,324 + EX28DRAFT_3193 0.89 -0.1 494,324 + EX28DRAFT_3193 0.89 +0.7 494,324 + EX28DRAFT_3193 0.89 -1.5 494,325 - EX28DRAFT_3193 0.89 +1.3 494,325 - EX28DRAFT_3193 0.89 +0.9 494,325 - EX28DRAFT_3193 0.89 -0.5 494,436 + -0.2 494,436 + -1.5 494,529 + +0.6 494,530 - -0.5 494,587 - -2.2 494,729 + EX28DRAFT_3194 0.15 -0.5 494,761 + EX28DRAFT_3194 0.17 +0.7 494,761 + EX28DRAFT_3194 0.17 -0.1 494,761 + EX28DRAFT_3194 0.17 +0.2 494,761 + EX28DRAFT_3194 0.17 -0.6 494,762 - EX28DRAFT_3194 0.17 -0.1 494,777 - EX28DRAFT_3194 0.18 +0.1 494,821 - EX28DRAFT_3194 0.20 -0.4 494,857 + EX28DRAFT_3194 0.22 -0.1 494,858 - EX28DRAFT_3194 0.22 -2.9 494,858 - EX28DRAFT_3194 0.22 +0.1 494,862 - EX28DRAFT_3194 0.22 -0.7 494,938 + EX28DRAFT_3194 0.26 -0.2 494,938 + EX28DRAFT_3194 0.26 +0.9 494,938 + EX28DRAFT_3194 0.26 +0.6 494,939 - EX28DRAFT_3194 0.26 +1.3 494,939 - EX28DRAFT_3194 0.26 +1.2 494,939 - EX28DRAFT_3194 0.26 -0.6 494,970 - EX28DRAFT_3194 0.28 -0.1 494,970 - EX28DRAFT_3194 0.28 -1.0 494,970 - EX28DRAFT_3194 0.28 +0.1 494,970 - EX28DRAFT_3194 0.28 +0.4 495,012 + EX28DRAFT_3194 0.30 +0.7 495,099 + EX28DRAFT_3194 0.35 -3.2 495,099 + EX28DRAFT_3194 0.35 -1.4 495,100 - EX28DRAFT_3194 0.35 +3.8 495,100 - EX28DRAFT_3194 0.35 +0.1 495,106 + EX28DRAFT_3194 0.35 -0.3 495,106 + EX28DRAFT_3194 0.35 -0.0 495,110 + EX28DRAFT_3194 0.35 +0.1 495,111 - EX28DRAFT_3194 0.35 +0.6 495,193 - EX28DRAFT_3194 0.40 +0.6 495,373 + EX28DRAFT_3194 0.49 -2.1 495,375 + EX28DRAFT_3194 0.49 +1.4 495,376 - EX28DRAFT_3194 0.49 +0.2
Or see this region's nucleotide sequence