Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3091 and EX28DRAFT_3092 are separated by 10 nucleotides EX28DRAFT_3092 and EX28DRAFT_3093 are separated by 10 nucleotides EX28DRAFT_3093 and EX28DRAFT_3094 overlap by 8 nucleotides EX28DRAFT_3094 and EX28DRAFT_3095 are separated by 9 nucleotides EX28DRAFT_3095 and EX28DRAFT_3096 are separated by 9 nucleotides
EX28DRAFT_3091: EX28DRAFT_3091 - Urease accessory protein UreH, at 403,011 to 403,838
_3091
EX28DRAFT_3092: EX28DRAFT_3092 - urease, gamma subunit, at 403,849 to 404,151
_3092
EX28DRAFT_3093: EX28DRAFT_3093 - urease, beta subunit, at 404,162 to 404,476
_3093
EX28DRAFT_3094: EX28DRAFT_3094 - urease, alpha subunit, at 404,469 to 406,172
_3094
EX28DRAFT_3095: EX28DRAFT_3095 - Urease accessory protein UreE, at 406,182 to 406,646
_3095
EX28DRAFT_3096: EX28DRAFT_3096 - Hydrogenase/urease accessory protein, at 406,656 to 407,195
_3096
Position (kb) 404
405
406
407 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 403.528 kb on + strand, within EX28DRAFT_3091 at 403.529 kb on - strand, within EX28DRAFT_3091 at 403.623 kb on + strand, within EX28DRAFT_3091 at 403.624 kb on - strand, within EX28DRAFT_3091 at 403.836 kb on + strand at 403.836 kb on + strand at 403.837 kb on - strand at 403.837 kb on - strand at 403.942 kb on + strand, within EX28DRAFT_3092 at 404.288 kb on + strand, within EX28DRAFT_3093 at 404.289 kb on - strand, within EX28DRAFT_3093 at 404.451 kb on + strand at 404.477 kb on + strand at 404.494 kb on - strand at 404.502 kb on - strand at 404.502 kb on - strand at 404.525 kb on + strand at 404.526 kb on - strand at 404.665 kb on + strand, within EX28DRAFT_3094 at 404.665 kb on + strand, within EX28DRAFT_3094 at 404.665 kb on + strand, within EX28DRAFT_3094 at 404.665 kb on + strand, within EX28DRAFT_3094 at 404.665 kb on + strand, within EX28DRAFT_3094 at 404.666 kb on - strand, within EX28DRAFT_3094 at 405.189 kb on - strand, within EX28DRAFT_3094 at 405.344 kb on + strand, within EX28DRAFT_3094 at 405.363 kb on - strand, within EX28DRAFT_3094 at 405.379 kb on - strand, within EX28DRAFT_3094 at 405.650 kb on + strand, within EX28DRAFT_3094 at 405.684 kb on - strand, within EX28DRAFT_3094 at 405.684 kb on - strand, within EX28DRAFT_3094 at 405.687 kb on + strand, within EX28DRAFT_3094 at 405.688 kb on - strand, within EX28DRAFT_3094 at 405.688 kb on - strand, within EX28DRAFT_3094 at 405.942 kb on - strand, within EX28DRAFT_3094 at 406.067 kb on + strand at 406.068 kb on - strand at 406.117 kb on + strand at 406.188 kb on + strand at 406.188 kb on + strand at 406.189 kb on - strand at 406.189 kb on - strand at 406.189 kb on - strand at 406.189 kb on - strand at 406.193 kb on - strand at 406.504 kb on - strand, within EX28DRAFT_3095 at 406.596 kb on + strand, within EX28DRAFT_3095 at 406.597 kb on - strand, within EX28DRAFT_3095 at 406.599 kb on - strand, within EX28DRAFT_3095 at 406.599 kb on - strand, within EX28DRAFT_3095 at 406.644 kb on + strand at 406.666 kb on - strand at 406.666 kb on - strand at 406.956 kb on - strand, within EX28DRAFT_3096
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 403,528 + EX28DRAFT_3091 0.62 +0.6 403,529 - EX28DRAFT_3091 0.63 -0.1 403,623 + EX28DRAFT_3091 0.74 +2.2 403,624 - EX28DRAFT_3091 0.74 +1.2 403,836 + +0.3 403,836 + +4.7 403,837 - -0.2 403,837 - +0.3 403,942 + EX28DRAFT_3092 0.31 +3.8 404,288 + EX28DRAFT_3093 0.40 +0.1 404,289 - EX28DRAFT_3093 0.40 -1.4 404,451 + -0.8 404,477 + +0.3 404,494 - -0.5 404,502 - -1.0 404,502 - -1.5 404,525 + +0.8 404,526 - -0.1 404,665 + EX28DRAFT_3094 0.12 +0.5 404,665 + EX28DRAFT_3094 0.12 -0.8 404,665 + EX28DRAFT_3094 0.12 -2.2 404,665 + EX28DRAFT_3094 0.12 +1.0 404,665 + EX28DRAFT_3094 0.12 -3.3 404,666 - EX28DRAFT_3094 0.12 -0.1 405,189 - EX28DRAFT_3094 0.42 -0.7 405,344 + EX28DRAFT_3094 0.51 -0.6 405,363 - EX28DRAFT_3094 0.52 -0.7 405,379 - EX28DRAFT_3094 0.53 +1.2 405,650 + EX28DRAFT_3094 0.69 +1.2 405,684 - EX28DRAFT_3094 0.71 +0.1 405,684 - EX28DRAFT_3094 0.71 +0.2 405,687 + EX28DRAFT_3094 0.71 +0.9 405,688 - EX28DRAFT_3094 0.72 +0.5 405,688 - EX28DRAFT_3094 0.72 -0.8 405,942 - EX28DRAFT_3094 0.86 -0.6 406,067 + -0.6 406,068 - -0.7 406,117 + +0.5 406,188 + -0.4 406,188 + -2.2 406,189 - +0.1 406,189 - -1.4 406,189 - -0.4 406,189 - +0.8 406,193 - -0.4 406,504 - EX28DRAFT_3095 0.69 +0.2 406,596 + EX28DRAFT_3095 0.89 -3.9 406,597 - EX28DRAFT_3095 0.89 +0.2 406,599 - EX28DRAFT_3095 0.90 +2.2 406,599 - EX28DRAFT_3095 0.90 -2.0 406,644 + -0.4 406,666 - +2.3 406,666 - +0.3 406,956 - EX28DRAFT_3096 0.56 -0.7
Or see this region's nucleotide sequence