Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3088 and EX28DRAFT_3089 are separated by 40 nucleotides EX28DRAFT_3089 and EX28DRAFT_3090 are separated by 147 nucleotides EX28DRAFT_3090 and EX28DRAFT_3091 are separated by 145 nucleotides EX28DRAFT_3091 and EX28DRAFT_3092 are separated by 10 nucleotides
EX28DRAFT_3088: EX28DRAFT_3088 - Arabinose efflux permease, at 399,775 to 401,241
_3088
EX28DRAFT_3089: EX28DRAFT_3089 - Transcriptional regulators, at 401,282 to 401,704
_3089
EX28DRAFT_3090: EX28DRAFT_3090 - Esterase/lipase, at 401,852 to 402,865
_3090
EX28DRAFT_3091: EX28DRAFT_3091 - Urease accessory protein UreH, at 403,011 to 403,838
_3091
EX28DRAFT_3092: EX28DRAFT_3092 - urease, gamma subunit, at 403,849 to 404,151
_3092
Position (kb) 401
402
403 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 401.250 kb on + strand at 401.250 kb on + strand at 401.251 kb on - strand at 401.251 kb on - strand at 401.251 kb on - strand at 401.283 kb on + strand at 401.283 kb on + strand at 401.284 kb on - strand at 401.284 kb on - strand at 401.284 kb on - strand at 401.418 kb on - strand, within EX28DRAFT_3089 at 401.832 kb on - strand at 401.848 kb on + strand at 401.947 kb on - strand at 401.959 kb on + strand, within EX28DRAFT_3090 at 402.157 kb on + strand, within EX28DRAFT_3090 at 402.158 kb on - strand, within EX28DRAFT_3090 at 402.301 kb on + strand, within EX28DRAFT_3090 at 402.499 kb on + strand, within EX28DRAFT_3090 at 402.509 kb on + strand, within EX28DRAFT_3090 at 402.510 kb on - strand, within EX28DRAFT_3090 at 402.530 kb on + strand, within EX28DRAFT_3090 at 402.572 kb on + strand, within EX28DRAFT_3090 at 402.573 kb on - strand, within EX28DRAFT_3090 at 402.602 kb on - strand, within EX28DRAFT_3090 at 402.715 kb on + strand, within EX28DRAFT_3090 at 402.715 kb on + strand, within EX28DRAFT_3090 at 402.879 kb on + strand at 402.881 kb on + strand at 402.882 kb on - strand at 402.882 kb on - strand at 402.882 kb on - strand at 402.944 kb on + strand at 402.944 kb on + strand at 403.034 kb on + strand at 403.037 kb on + strand at 403.038 kb on - strand at 403.038 kb on - strand at 403.041 kb on + strand at 403.041 kb on + strand at 403.042 kb on - strand at 403.042 kb on - strand at 403.176 kb on + strand, within EX28DRAFT_3091 at 403.177 kb on - strand, within EX28DRAFT_3091 at 403.528 kb on + strand, within EX28DRAFT_3091 at 403.529 kb on - strand, within EX28DRAFT_3091 at 403.623 kb on + strand, within EX28DRAFT_3091 at 403.624 kb on - strand, within EX28DRAFT_3091 at 403.836 kb on + strand at 403.836 kb on + strand at 403.837 kb on - strand at 403.837 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 401,250 + -3.0 401,250 + -3.1 401,251 - +0.8 401,251 - -0.2 401,251 - +1.4 401,283 + -2.5 401,283 + +1.0 401,284 - +0.1 401,284 - -0.9 401,284 - +0.5 401,418 - EX28DRAFT_3089 0.32 -0.6 401,832 - -1.6 401,848 + +0.9 401,947 - -2.2 401,959 + EX28DRAFT_3090 0.11 +0.2 402,157 + EX28DRAFT_3090 0.30 -0.6 402,158 - EX28DRAFT_3090 0.30 -0.0 402,301 + EX28DRAFT_3090 0.44 -0.7 402,499 + EX28DRAFT_3090 0.64 -1.9 402,509 + EX28DRAFT_3090 0.65 -1.8 402,510 - EX28DRAFT_3090 0.65 +2.2 402,530 + EX28DRAFT_3090 0.67 +0.5 402,572 + EX28DRAFT_3090 0.71 +2.7 402,573 - EX28DRAFT_3090 0.71 -0.9 402,602 - EX28DRAFT_3090 0.74 +4.4 402,715 + EX28DRAFT_3090 0.85 -2.1 402,715 + EX28DRAFT_3090 0.85 -1.7 402,879 + -0.3 402,881 + -0.0 402,882 - -0.2 402,882 - +1.4 402,882 - -0.0 402,944 + -0.3 402,944 + -0.2 403,034 + -1.8 403,037 + -3.1 403,038 - +1.0 403,038 - -0.1 403,041 + -0.3 403,041 + +0.2 403,042 - -1.4 403,042 - +1.1 403,176 + EX28DRAFT_3091 0.20 -0.5 403,177 - EX28DRAFT_3091 0.20 +1.0 403,528 + EX28DRAFT_3091 0.62 +0.6 403,529 - EX28DRAFT_3091 0.63 -0.1 403,623 + EX28DRAFT_3091 0.74 +2.2 403,624 - EX28DRAFT_3091 0.74 +1.2 403,836 + +0.3 403,836 + +4.7 403,837 - -0.2 403,837 - +0.3
Or see this region's nucleotide sequence