Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3087

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3085 and EX28DRAFT_3086 are separated by 105 nucleotidesEX28DRAFT_3086 and EX28DRAFT_3087 are separated by 107 nucleotidesEX28DRAFT_3087 and EX28DRAFT_3088 are separated by 84 nucleotides EX28DRAFT_3085: EX28DRAFT_3085 - undecaprenyl-diphosphatase UppP, at 397,667 to 398,488 _3085 EX28DRAFT_3086: EX28DRAFT_3086 - dihydroneopterin aldolase, at 398,594 to 398,962 _3086 EX28DRAFT_3087: EX28DRAFT_3087 - acyl-phosphate glycerol 3-phosphate acyltransferase, at 399,070 to 399,690 _3087 EX28DRAFT_3088: EX28DRAFT_3088 - Arabinose efflux permease, at 399,775 to 401,241 _3088 Position (kb) 399 400Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 398.096 kb on + strand, within EX28DRAFT_3085at 398.097 kb on - strand, within EX28DRAFT_3085at 398.118 kb on + strand, within EX28DRAFT_3085at 398.119 kb on - strand, within EX28DRAFT_3085at 398.206 kb on + strand, within EX28DRAFT_3085at 398.207 kb on - strand, within EX28DRAFT_3085at 398.320 kb on + strand, within EX28DRAFT_3085at 398.398 kb on + strand, within EX28DRAFT_3085at 398.399 kb on - strand, within EX28DRAFT_3085at 398.454 kb on - strandat 398.490 kb on + strandat 398.491 kb on - strandat 398.491 kb on - strandat 398.491 kb on - strandat 398.491 kb on - strandat 398.546 kb on + strandat 398.546 kb on + strandat 398.546 kb on + strandat 398.547 kb on - strandat 398.547 kb on - strandat 398.566 kb on - strandat 398.570 kb on + strandat 398.596 kb on - strandat 399.018 kb on - strandat 399.039 kb on + strandat 399.045 kb on + strandat 399.046 kb on - strandat 399.069 kb on + strandat 399.106 kb on + strandat 399.107 kb on - strandat 399.206 kb on + strand, within EX28DRAFT_3087at 399.206 kb on + strand, within EX28DRAFT_3087at 399.207 kb on - strand, within EX28DRAFT_3087at 399.207 kb on - strand, within EX28DRAFT_3087at 399.207 kb on - strand, within EX28DRAFT_3087at 399.290 kb on - strand, within EX28DRAFT_3087at 399.375 kb on + strand, within EX28DRAFT_3087at 399.529 kb on + strand, within EX28DRAFT_3087at 399.529 kb on + strand, within EX28DRAFT_3087at 399.529 kb on + strand, within EX28DRAFT_3087at 399.689 kb on - strandat 399.692 kb on + strandat 399.766 kb on - strandat 399.817 kb on - strandat 399.817 kb on - strandat 399.863 kb on + strandat 399.863 kb on + strandat 399.864 kb on - strandat 399.864 kb on - strandat 399.953 kb on - strand, within EX28DRAFT_3088at 399.982 kb on - strand, within EX28DRAFT_3088at 400.082 kb on - strand, within EX28DRAFT_3088at 400.177 kb on + strand, within EX28DRAFT_3088at 400.177 kb on + strand, within EX28DRAFT_3088at 400.285 kb on - strand, within EX28DRAFT_3088at 400.364 kb on - strand, within EX28DRAFT_3088at 400.462 kb on + strand, within EX28DRAFT_3088at 400.462 kb on + strand, within EX28DRAFT_3088at 400.462 kb on + strand, within EX28DRAFT_3088at 400.464 kb on + strand, within EX28DRAFT_3088at 400.465 kb on - strand, within EX28DRAFT_3088at 400.538 kb on - strand, within EX28DRAFT_3088at 400.539 kb on + strand, within EX28DRAFT_3088at 400.539 kb on + strand, within EX28DRAFT_3088at 400.539 kb on + strand, within EX28DRAFT_3088at 400.540 kb on - strand, within EX28DRAFT_3088at 400.597 kb on - strand, within EX28DRAFT_3088at 400.639 kb on + strand, within EX28DRAFT_3088at 400.639 kb on + strand, within EX28DRAFT_3088at 400.640 kb on - strand, within EX28DRAFT_3088at 400.679 kb on + strand, within EX28DRAFT_3088at 400.680 kb on - strand, within EX28DRAFT_3088

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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398,096 + EX28DRAFT_3085 0.52 -2.7
398,097 - EX28DRAFT_3085 0.52 +0.3
398,118 + EX28DRAFT_3085 0.55 -1.6
398,119 - EX28DRAFT_3085 0.55 +2.5
398,206 + EX28DRAFT_3085 0.66 +0.4
398,207 - EX28DRAFT_3085 0.66 +0.2
398,320 + EX28DRAFT_3085 0.79 -3.8
398,398 + EX28DRAFT_3085 0.89 -0.2
398,399 - EX28DRAFT_3085 0.89 +0.3
398,454 - -0.7
398,490 + -1.0
398,491 - -0.4
398,491 - +0.8
398,491 - +0.2
398,491 - +0.1
398,546 + -0.5
398,546 + +2.2
398,546 + -0.1
398,547 - -0.7
398,547 - +2.2
398,566 - +2.9
398,570 + -1.5
398,596 - -0.3
399,018 - +0.4
399,039 + -2.1
399,045 + +0.2
399,046 - -0.3
399,069 + +0.1
399,106 + +1.6
399,107 - -1.4
399,206 + EX28DRAFT_3087 0.22 +0.1
399,206 + EX28DRAFT_3087 0.22 -0.1
399,207 - EX28DRAFT_3087 0.22 +1.1
399,207 - EX28DRAFT_3087 0.22 -1.5
399,207 - EX28DRAFT_3087 0.22 +0.1
399,290 - EX28DRAFT_3087 0.35 -1.0
399,375 + EX28DRAFT_3087 0.49 -1.2
399,529 + EX28DRAFT_3087 0.74 +3.4
399,529 + EX28DRAFT_3087 0.74 -0.5
399,529 + EX28DRAFT_3087 0.74 +0.7
399,689 - -0.6
399,692 + -0.2
399,766 - -0.3
399,817 - +0.8
399,817 - +1.2
399,863 + +1.7
399,863 + +0.2
399,864 - +0.2
399,864 - +0.9
399,953 - EX28DRAFT_3088 0.12 -0.6
399,982 - EX28DRAFT_3088 0.14 +0.4
400,082 - EX28DRAFT_3088 0.21 +0.7
400,177 + EX28DRAFT_3088 0.27 +0.0
400,177 + EX28DRAFT_3088 0.27 +0.6
400,285 - EX28DRAFT_3088 0.35 +0.2
400,364 - EX28DRAFT_3088 0.40 +0.1
400,462 + EX28DRAFT_3088 0.47 +0.8
400,462 + EX28DRAFT_3088 0.47 +0.8
400,462 + EX28DRAFT_3088 0.47 -2.5
400,464 + EX28DRAFT_3088 0.47 +0.4
400,465 - EX28DRAFT_3088 0.47 +3.7
400,538 - EX28DRAFT_3088 0.52 +0.4
400,539 + EX28DRAFT_3088 0.52 -0.3
400,539 + EX28DRAFT_3088 0.52 -0.8
400,539 + EX28DRAFT_3088 0.52 -0.3
400,540 - EX28DRAFT_3088 0.52 +0.1
400,597 - EX28DRAFT_3088 0.56 -0.2
400,639 + EX28DRAFT_3088 0.59 -0.8
400,639 + EX28DRAFT_3088 0.59 -0.1
400,640 - EX28DRAFT_3088 0.59 -0.6
400,679 + EX28DRAFT_3088 0.62 +1.0
400,680 - EX28DRAFT_3088 0.62 -3.6

Or see this region's nucleotide sequence