Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3030

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3028 and EX28DRAFT_3029 are separated by 160 nucleotidesEX28DRAFT_3029 and EX28DRAFT_3030 are separated by 73 nucleotidesEX28DRAFT_3030 and EX28DRAFT_3031 overlap by 11 nucleotidesEX28DRAFT_3031 and EX28DRAFT_3032 are separated by 24 nucleotides EX28DRAFT_3028: EX28DRAFT_3028 - Glutathione S-transferase, at 340,028 to 340,894 _3028 EX28DRAFT_3029: EX28DRAFT_3029 - hypothetical protein, at 341,055 to 341,387 _3029 EX28DRAFT_3030: EX28DRAFT_3030 - Esterase/lipase, at 341,461 to 342,363 _3030 EX28DRAFT_3031: EX28DRAFT_3031 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 342,353 to 343,249 _3031 EX28DRAFT_3032: EX28DRAFT_3032 - Sugar phosphate isomerases/epimerases, at 343,274 to 344,329 _3032 Position (kb) 341 342 343Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 340.520 kb on + strand, within EX28DRAFT_3028at 340.520 kb on + strand, within EX28DRAFT_3028at 340.521 kb on - strand, within EX28DRAFT_3028at 340.521 kb on - strand, within EX28DRAFT_3028at 340.526 kb on + strand, within EX28DRAFT_3028at 340.526 kb on + strand, within EX28DRAFT_3028at 340.527 kb on - strand, within EX28DRAFT_3028at 340.527 kb on - strand, within EX28DRAFT_3028at 340.527 kb on - strand, within EX28DRAFT_3028at 340.640 kb on + strand, within EX28DRAFT_3028at 340.640 kb on + strand, within EX28DRAFT_3028at 340.640 kb on + strand, within EX28DRAFT_3028at 340.640 kb on + strand, within EX28DRAFT_3028at 340.641 kb on - strand, within EX28DRAFT_3028at 340.641 kb on - strand, within EX28DRAFT_3028at 340.734 kb on - strand, within EX28DRAFT_3028at 340.739 kb on - strand, within EX28DRAFT_3028at 340.870 kb on + strandat 340.879 kb on + strandat 340.879 kb on + strandat 340.879 kb on + strandat 340.879 kb on + strandat 340.880 kb on - strandat 340.880 kb on - strandat 340.892 kb on + strandat 340.950 kb on + strandat 340.951 kb on - strandat 340.970 kb on + strandat 340.983 kb on - strandat 341.055 kb on - strandat 341.066 kb on + strandat 341.066 kb on + strandat 341.253 kb on - strand, within EX28DRAFT_3029at 341.514 kb on + strandat 341.514 kb on + strandat 341.514 kb on + strandat 341.514 kb on + strandat 341.515 kb on - strandat 341.557 kb on + strand, within EX28DRAFT_3030at 341.592 kb on - strand, within EX28DRAFT_3030at 341.621 kb on + strand, within EX28DRAFT_3030at 341.622 kb on - strand, within EX28DRAFT_3030at 341.671 kb on - strand, within EX28DRAFT_3030at 341.687 kb on + strand, within EX28DRAFT_3030at 341.750 kb on + strand, within EX28DRAFT_3030at 341.750 kb on + strand, within EX28DRAFT_3030at 341.750 kb on + strand, within EX28DRAFT_3030at 341.751 kb on - strand, within EX28DRAFT_3030at 341.751 kb on - strand, within EX28DRAFT_3030at 341.751 kb on - strand, within EX28DRAFT_3030at 341.751 kb on - strand, within EX28DRAFT_3030at 341.751 kb on - strand, within EX28DRAFT_3030at 341.800 kb on + strand, within EX28DRAFT_3030at 341.927 kb on - strand, within EX28DRAFT_3030at 342.035 kb on - strand, within EX28DRAFT_3030at 342.035 kb on - strand, within EX28DRAFT_3030at 342.080 kb on + strand, within EX28DRAFT_3030at 342.168 kb on + strand, within EX28DRAFT_3030at 342.171 kb on - strand, within EX28DRAFT_3030at 342.215 kb on + strand, within EX28DRAFT_3030at 342.215 kb on + strand, within EX28DRAFT_3030at 342.216 kb on - strand, within EX28DRAFT_3030at 342.216 kb on - strand, within EX28DRAFT_3030at 342.352 kb on - strandat 342.389 kb on + strandat 342.430 kb on + strandat 342.431 kb on - strandat 342.485 kb on + strand, within EX28DRAFT_3031at 342.653 kb on - strand, within EX28DRAFT_3031at 342.653 kb on - strand, within EX28DRAFT_3031at 342.654 kb on + strand, within EX28DRAFT_3031at 342.654 kb on + strand, within EX28DRAFT_3031at 342.654 kb on + strand, within EX28DRAFT_3031at 342.654 kb on + strand, within EX28DRAFT_3031at 342.655 kb on - strand, within EX28DRAFT_3031at 342.655 kb on - strand, within EX28DRAFT_3031at 342.655 kb on - strand, within EX28DRAFT_3031at 342.655 kb on - strand, within EX28DRAFT_3031at 342.655 kb on - strand, within EX28DRAFT_3031at 342.655 kb on - strand, within EX28DRAFT_3031at 342.655 kb on - strand, within EX28DRAFT_3031at 342.655 kb on - strand, within EX28DRAFT_3031at 342.704 kb on - strand, within EX28DRAFT_3031at 342.704 kb on - strand, within EX28DRAFT_3031at 342.715 kb on - strand, within EX28DRAFT_3031at 342.715 kb on - strand, within EX28DRAFT_3031at 342.929 kb on + strand, within EX28DRAFT_3031at 342.932 kb on + strand, within EX28DRAFT_3031at 342.932 kb on + strand, within EX28DRAFT_3031at 342.932 kb on + strand, within EX28DRAFT_3031at 342.932 kb on + strand, within EX28DRAFT_3031at 342.933 kb on - strand, within EX28DRAFT_3031at 342.937 kb on + strand, within EX28DRAFT_3031at 342.937 kb on + strand, within EX28DRAFT_3031at 342.938 kb on - strand, within EX28DRAFT_3031at 342.938 kb on - strand, within EX28DRAFT_3031at 342.938 kb on - strand, within EX28DRAFT_3031at 342.938 kb on - strand, within EX28DRAFT_3031at 342.938 kb on - strand, within EX28DRAFT_3031at 342.938 kb on - strand, within EX28DRAFT_3031at 342.938 kb on - strand, within EX28DRAFT_3031at 342.938 kb on - strand, within EX28DRAFT_3031at 342.971 kb on - strand, within EX28DRAFT_3031at 343.092 kb on + strand, within EX28DRAFT_3031at 343.092 kb on + strand, within EX28DRAFT_3031at 343.093 kb on - strand, within EX28DRAFT_3031at 343.102 kb on + strand, within EX28DRAFT_3031at 343.105 kb on - strand, within EX28DRAFT_3031at 343.194 kb on + strandat 343.194 kb on + strandat 343.195 kb on - strandat 343.236 kb on + strandat 343.289 kb on + strandat 343.361 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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340,520 + EX28DRAFT_3028 0.57 +0.6
340,520 + EX28DRAFT_3028 0.57 -1.4
340,521 - EX28DRAFT_3028 0.57 -1.3
340,521 - EX28DRAFT_3028 0.57 +0.2
340,526 + EX28DRAFT_3028 0.57 +0.2
340,526 + EX28DRAFT_3028 0.57 +0.9
340,527 - EX28DRAFT_3028 0.58 -0.4
340,527 - EX28DRAFT_3028 0.58 +1.7
340,527 - EX28DRAFT_3028 0.58 -1.6
340,640 + EX28DRAFT_3028 0.71 -2.7
340,640 + EX28DRAFT_3028 0.71 +0.2
340,640 + EX28DRAFT_3028 0.71 -1.4
340,640 + EX28DRAFT_3028 0.71 -0.6
340,641 - EX28DRAFT_3028 0.71 -0.5
340,641 - EX28DRAFT_3028 0.71 -0.5
340,734 - EX28DRAFT_3028 0.81 +0.4
340,739 - EX28DRAFT_3028 0.82 +0.1
340,870 + +1.4
340,879 + -1.0
340,879 + +1.6
340,879 + +0.9
340,879 + -0.7
340,880 - +0.2
340,880 - +0.5
340,892 + -1.0
340,950 + +1.3
340,951 - +0.3
340,970 + +1.2
340,983 - -0.7
341,055 - +0.3
341,066 + +0.2
341,066 + -2.1
341,253 - EX28DRAFT_3029 0.59 -0.2
341,514 + -0.2
341,514 + -1.1
341,514 + +0.0
341,514 + -0.1
341,515 - +0.4
341,557 + EX28DRAFT_3030 0.11 -0.0
341,592 - EX28DRAFT_3030 0.15 -3.2
341,621 + EX28DRAFT_3030 0.18 -0.2
341,622 - EX28DRAFT_3030 0.18 +1.1
341,671 - EX28DRAFT_3030 0.23 +1.5
341,687 + EX28DRAFT_3030 0.25 -0.7
341,750 + EX28DRAFT_3030 0.32 -1.4
341,750 + EX28DRAFT_3030 0.32 +0.1
341,750 + EX28DRAFT_3030 0.32 +1.2
341,751 - EX28DRAFT_3030 0.32 +0.2
341,751 - EX28DRAFT_3030 0.32 +2.0
341,751 - EX28DRAFT_3030 0.32 +0.0
341,751 - EX28DRAFT_3030 0.32 -0.7
341,751 - EX28DRAFT_3030 0.32 -0.4
341,800 + EX28DRAFT_3030 0.38 +0.5
341,927 - EX28DRAFT_3030 0.52 -0.1
342,035 - EX28DRAFT_3030 0.64 +0.9
342,035 - EX28DRAFT_3030 0.64 +0.6
342,080 + EX28DRAFT_3030 0.69 -0.3
342,168 + EX28DRAFT_3030 0.78 -1.4
342,171 - EX28DRAFT_3030 0.79 +0.1
342,215 + EX28DRAFT_3030 0.83 +1.5
342,215 + EX28DRAFT_3030 0.83 +0.8
342,216 - EX28DRAFT_3030 0.84 +0.5
342,216 - EX28DRAFT_3030 0.84 +0.7
342,352 - +0.6
342,389 + +0.5
342,430 + -1.3
342,431 - -0.7
342,485 + EX28DRAFT_3031 0.15 -0.4
342,653 - EX28DRAFT_3031 0.33 +0.3
342,653 - EX28DRAFT_3031 0.33 +1.0
342,654 + EX28DRAFT_3031 0.34 -3.4
342,654 + EX28DRAFT_3031 0.34 +1.0
342,654 + EX28DRAFT_3031 0.34 -0.3
342,654 + EX28DRAFT_3031 0.34 +0.6
342,655 - EX28DRAFT_3031 0.34 -4.7
342,655 - EX28DRAFT_3031 0.34 -0.2
342,655 - EX28DRAFT_3031 0.34 +0.0
342,655 - EX28DRAFT_3031 0.34 -0.5
342,655 - EX28DRAFT_3031 0.34 -0.2
342,655 - EX28DRAFT_3031 0.34 +2.6
342,655 - EX28DRAFT_3031 0.34 +0.1
342,655 - EX28DRAFT_3031 0.34 -0.8
342,704 - EX28DRAFT_3031 0.39 +0.6
342,704 - EX28DRAFT_3031 0.39 -4.1
342,715 - EX28DRAFT_3031 0.40 +2.2
342,715 - EX28DRAFT_3031 0.40 -0.2
342,929 + EX28DRAFT_3031 0.64 +1.2
342,932 + EX28DRAFT_3031 0.65 -0.3
342,932 + EX28DRAFT_3031 0.65 +0.9
342,932 + EX28DRAFT_3031 0.65 -0.1
342,932 + EX28DRAFT_3031 0.65 -0.0
342,933 - EX28DRAFT_3031 0.65 +1.2
342,937 + EX28DRAFT_3031 0.65 -2.0
342,937 + EX28DRAFT_3031 0.65 +0.1
342,938 - EX28DRAFT_3031 0.65 +1.1
342,938 - EX28DRAFT_3031 0.65 -1.1
342,938 - EX28DRAFT_3031 0.65 -3.8
342,938 - EX28DRAFT_3031 0.65 -0.2
342,938 - EX28DRAFT_3031 0.65 -2.6
342,938 - EX28DRAFT_3031 0.65 +0.1
342,938 - EX28DRAFT_3031 0.65 +1.3
342,938 - EX28DRAFT_3031 0.65 +1.3
342,971 - EX28DRAFT_3031 0.69 +0.1
343,092 + EX28DRAFT_3031 0.82 +1.0
343,092 + EX28DRAFT_3031 0.82 -1.8
343,093 - EX28DRAFT_3031 0.82 -0.8
343,102 + EX28DRAFT_3031 0.84 -0.2
343,105 - EX28DRAFT_3031 0.84 +0.0
343,194 + +1.1
343,194 + -0.1
343,195 - +0.8
343,236 + +1.2
343,289 + -2.2
343,361 - +0.6

Or see this region's nucleotide sequence