Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2931 and EX28DRAFT_2932 are separated by 3 nucleotides EX28DRAFT_2932 and EX28DRAFT_2933 are separated by 168 nucleotides
EX28DRAFT_2931: EX28DRAFT_2931 - Signal transduction histidine kinase regulating citrate/malate metabolism, at 240,454 to 242,091
_2931
EX28DRAFT_2932: EX28DRAFT_2932 - Response regulator of citrate/malate metabolism, at 242,095 to 242,796
_2932
EX28DRAFT_2933: EX28DRAFT_2933 - ABC-type Fe3+ transport system, periplasmic component, at 242,965 to 244,053
_2933
Position (kb) 242
243 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 241.107 kb on - strand, within EX28DRAFT_2931 at 241.107 kb on - strand, within EX28DRAFT_2931 at 241.117 kb on + strand, within EX28DRAFT_2931 at 241.118 kb on - strand, within EX28DRAFT_2931 at 241.118 kb on - strand, within EX28DRAFT_2931 at 241.118 kb on - strand, within EX28DRAFT_2931 at 241.118 kb on - strand, within EX28DRAFT_2931 at 241.127 kb on + strand, within EX28DRAFT_2931 at 241.160 kb on + strand, within EX28DRAFT_2931 at 241.160 kb on + strand, within EX28DRAFT_2931 at 241.388 kb on - strand, within EX28DRAFT_2931 at 241.451 kb on - strand, within EX28DRAFT_2931 at 241.470 kb on + strand, within EX28DRAFT_2931 at 241.471 kb on - strand, within EX28DRAFT_2931 at 241.531 kb on + strand, within EX28DRAFT_2931 at 241.532 kb on - strand, within EX28DRAFT_2931 at 241.549 kb on + strand, within EX28DRAFT_2931 at 241.549 kb on + strand, within EX28DRAFT_2931 at 241.549 kb on + strand, within EX28DRAFT_2931 at 241.646 kb on - strand, within EX28DRAFT_2931 at 241.646 kb on - strand, within EX28DRAFT_2931 at 241.752 kb on + strand, within EX28DRAFT_2931 at 241.817 kb on - strand, within EX28DRAFT_2931 at 241.830 kb on + strand, within EX28DRAFT_2931 at 241.841 kb on + strand, within EX28DRAFT_2931 at 241.842 kb on - strand, within EX28DRAFT_2931 at 241.842 kb on - strand, within EX28DRAFT_2931 at 241.988 kb on - strand at 241.988 kb on - strand at 242.058 kb on + strand at 242.059 kb on - strand at 242.069 kb on + strand at 242.069 kb on + strand at 242.089 kb on + strand at 242.126 kb on + strand at 242.168 kb on - strand, within EX28DRAFT_2932 at 242.170 kb on - strand, within EX28DRAFT_2932 at 242.275 kb on + strand, within EX28DRAFT_2932 at 242.276 kb on - strand, within EX28DRAFT_2932 at 242.330 kb on - strand, within EX28DRAFT_2932 at 242.411 kb on - strand, within EX28DRAFT_2932 at 242.411 kb on - strand, within EX28DRAFT_2932 at 242.419 kb on - strand, within EX28DRAFT_2932 at 242.693 kb on - strand, within EX28DRAFT_2932 at 242.701 kb on + strand, within EX28DRAFT_2932 at 242.740 kb on + strand at 242.740 kb on + strand at 242.768 kb on + strand at 242.769 kb on - strand at 242.809 kb on + strand at 242.810 kb on - strand at 242.840 kb on + strand at 242.841 kb on - strand at 242.841 kb on - strand at 242.920 kb on - strand at 242.920 kb on - strand at 242.961 kb on + strand at 242.962 kb on - strand at 243.005 kb on + strand at 243.106 kb on + strand, within EX28DRAFT_2933 at 243.211 kb on + strand, within EX28DRAFT_2933 at 243.307 kb on + strand, within EX28DRAFT_2933 at 243.322 kb on - strand, within EX28DRAFT_2933 at 243.369 kb on + strand, within EX28DRAFT_2933 at 243.389 kb on - strand, within EX28DRAFT_2933 at 243.406 kb on - strand, within EX28DRAFT_2933 at 243.409 kb on + strand, within EX28DRAFT_2933 at 243.544 kb on - strand, within EX28DRAFT_2933 at 243.544 kb on - strand, within EX28DRAFT_2933 at 243.544 kb on - strand, within EX28DRAFT_2933 at 243.576 kb on + strand, within EX28DRAFT_2933 at 243.576 kb on + strand, within EX28DRAFT_2933 at 243.581 kb on - strand, within EX28DRAFT_2933 at 243.586 kb on - strand, within EX28DRAFT_2933 at 243.618 kb on - strand, within EX28DRAFT_2933 at 243.757 kb on + strand, within EX28DRAFT_2933 at 243.757 kb on + strand, within EX28DRAFT_2933 at 243.757 kb on + strand, within EX28DRAFT_2933
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 241,107 - EX28DRAFT_2931 0.40 +2.7 241,107 - EX28DRAFT_2931 0.40 -1.5 241,117 + EX28DRAFT_2931 0.40 -0.4 241,118 - EX28DRAFT_2931 0.41 -1.3 241,118 - EX28DRAFT_2931 0.41 +0.3 241,118 - EX28DRAFT_2931 0.41 -0.4 241,118 - EX28DRAFT_2931 0.41 -2.9 241,127 + EX28DRAFT_2931 0.41 -0.3 241,160 + EX28DRAFT_2931 0.43 +0.4 241,160 + EX28DRAFT_2931 0.43 -2.4 241,388 - EX28DRAFT_2931 0.57 -0.7 241,451 - EX28DRAFT_2931 0.61 -0.2 241,470 + EX28DRAFT_2931 0.62 -1.5 241,471 - EX28DRAFT_2931 0.62 -0.1 241,531 + EX28DRAFT_2931 0.66 -0.0 241,532 - EX28DRAFT_2931 0.66 -1.2 241,549 + EX28DRAFT_2931 0.67 +1.0 241,549 + EX28DRAFT_2931 0.67 -0.2 241,549 + EX28DRAFT_2931 0.67 -0.4 241,646 - EX28DRAFT_2931 0.73 -0.2 241,646 - EX28DRAFT_2931 0.73 -0.8 241,752 + EX28DRAFT_2931 0.79 +0.8 241,817 - EX28DRAFT_2931 0.83 -1.2 241,830 + EX28DRAFT_2931 0.84 -0.2 241,841 + EX28DRAFT_2931 0.85 -0.7 241,842 - EX28DRAFT_2931 0.85 +0.2 241,842 - EX28DRAFT_2931 0.85 +0.4 241,988 - -0.1 241,988 - -2.2 242,058 + +1.5 242,059 - -0.2 242,069 + -1.0 242,069 + -0.2 242,089 + +0.2 242,126 + -0.5 242,168 - EX28DRAFT_2932 0.10 -3.2 242,170 - EX28DRAFT_2932 0.11 -1.8 242,275 + EX28DRAFT_2932 0.26 -0.9 242,276 - EX28DRAFT_2932 0.26 -0.8 242,330 - EX28DRAFT_2932 0.33 +1.3 242,411 - EX28DRAFT_2932 0.45 -2.3 242,411 - EX28DRAFT_2932 0.45 -0.2 242,419 - EX28DRAFT_2932 0.46 +0.7 242,693 - EX28DRAFT_2932 0.85 -0.4 242,701 + EX28DRAFT_2932 0.86 +0.4 242,740 + -1.5 242,740 + -0.7 242,768 + +0.1 242,769 - -0.6 242,809 + -0.7 242,810 - +0.3 242,840 + +1.3 242,841 - -2.8 242,841 - -1.1 242,920 - +0.9 242,920 - -0.0 242,961 + +5.2 242,962 - -0.2 243,005 + +0.3 243,106 + EX28DRAFT_2933 0.13 +0.6 243,211 + EX28DRAFT_2933 0.23 -0.5 243,307 + EX28DRAFT_2933 0.31 +0.3 243,322 - EX28DRAFT_2933 0.33 +0.3 243,369 + EX28DRAFT_2933 0.37 -0.4 243,389 - EX28DRAFT_2933 0.39 +0.1 243,406 - EX28DRAFT_2933 0.40 +0.1 243,409 + EX28DRAFT_2933 0.41 -0.9 243,544 - EX28DRAFT_2933 0.53 +0.3 243,544 - EX28DRAFT_2933 0.53 +0.2 243,544 - EX28DRAFT_2933 0.53 -0.4 243,576 + EX28DRAFT_2933 0.56 -3.2 243,576 + EX28DRAFT_2933 0.56 -1.2 243,581 - EX28DRAFT_2933 0.57 -0.7 243,586 - EX28DRAFT_2933 0.57 -1.1 243,618 - EX28DRAFT_2933 0.60 -1.1 243,757 + EX28DRAFT_2933 0.73 +1.5 243,757 + EX28DRAFT_2933 0.73 -1.1 243,757 + EX28DRAFT_2933 0.73 -0.5
Or see this region's nucleotide sequence