Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2912

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2910 and EX28DRAFT_2911 are separated by 95 nucleotidesEX28DRAFT_2911 and EX28DRAFT_2912 are separated by 118 nucleotidesEX28DRAFT_2912 and EX28DRAFT_2913 are separated by 244 nucleotides EX28DRAFT_2910: EX28DRAFT_2910 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II, at 220,927 to 223,086 _2910 EX28DRAFT_2911: EX28DRAFT_2911 - RNA, at 223,182 to 223,267 _2911 EX28DRAFT_2912: EX28DRAFT_2912 - RNA, at 223,386 to 223,466 _2912 EX28DRAFT_2913: EX28DRAFT_2913 - Transcriptional regulators, at 223,711 to 224,727 _2913 Position (kb) 223 224Strain fitness (log2 ratio) -3 -2 -1 0 1at 222.511 kb on - strand, within EX28DRAFT_2910at 222.511 kb on - strand, within EX28DRAFT_2910at 222.541 kb on - strand, within EX28DRAFT_2910at 222.597 kb on + strand, within EX28DRAFT_2910at 222.597 kb on + strand, within EX28DRAFT_2910at 222.597 kb on + strand, within EX28DRAFT_2910at 222.598 kb on - strand, within EX28DRAFT_2910at 222.656 kb on + strand, within EX28DRAFT_2910at 222.657 kb on - strand, within EX28DRAFT_2910at 222.735 kb on - strand, within EX28DRAFT_2910at 222.765 kb on + strand, within EX28DRAFT_2910at 222.766 kb on - strand, within EX28DRAFT_2910at 222.814 kb on + strand, within EX28DRAFT_2910at 222.891 kb on - strandat 222.912 kb on + strandat 222.912 kb on + strandat 222.912 kb on + strandat 222.913 kb on - strandat 222.913 kb on - strandat 222.913 kb on - strandat 222.913 kb on - strandat 222.914 kb on + strandat 222.914 kb on + strandat 222.914 kb on + strandat 222.914 kb on + strandat 222.915 kb on - strandat 222.946 kb on + strandat 222.968 kb on - strandat 223.054 kb on - strandat 223.065 kb on + strandat 223.082 kb on - strandat 223.082 kb on - strandat 223.123 kb on - strandat 223.126 kb on - strandat 223.126 kb on - strandat 223.126 kb on - strandat 223.141 kb on - strandat 223.226 kb on - strand, within EX28DRAFT_2911at 223.235 kb on + strand, within EX28DRAFT_2911at 223.236 kb on - strand, within EX28DRAFT_2911at 223.349 kb on - strandat 223.419 kb on - strand, within EX28DRAFT_2912at 223.419 kb on - strand, within EX28DRAFT_2912at 223.451 kb on + strand, within EX28DRAFT_2912at 223.452 kb on - strand, within EX28DRAFT_2912at 223.457 kb on + strand, within EX28DRAFT_2912at 223.458 kb on - strand, within EX28DRAFT_2912at 223.458 kb on - strand, within EX28DRAFT_2912at 223.458 kb on - strand, within EX28DRAFT_2912at 223.478 kb on - strandat 223.490 kb on - strandat 223.492 kb on + strandat 223.493 kb on - strandat 223.493 kb on - strandat 223.493 kb on - strandat 223.534 kb on + strandat 223.844 kb on - strand, within EX28DRAFT_2913at 223.844 kb on - strand, within EX28DRAFT_2913at 223.844 kb on - strand, within EX28DRAFT_2913at 224.007 kb on + strand, within EX28DRAFT_2913at 224.008 kb on - strand, within EX28DRAFT_2913at 224.306 kb on - strand, within EX28DRAFT_2913at 224.440 kb on + strand, within EX28DRAFT_2913

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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222,511 - EX28DRAFT_2910 0.73 +0.6
222,511 - EX28DRAFT_2910 0.73 +1.6
222,541 - EX28DRAFT_2910 0.75 +0.5
222,597 + EX28DRAFT_2910 0.77 +0.4
222,597 + EX28DRAFT_2910 0.77 +0.6
222,597 + EX28DRAFT_2910 0.77 -0.3
222,598 - EX28DRAFT_2910 0.77 -2.9
222,656 + EX28DRAFT_2910 0.80 -0.1
222,657 - EX28DRAFT_2910 0.80 -0.1
222,735 - EX28DRAFT_2910 0.84 -2.4
222,765 + EX28DRAFT_2910 0.85 +1.4
222,766 - EX28DRAFT_2910 0.85 +1.3
222,814 + EX28DRAFT_2910 0.87 -0.6
222,891 - +1.4
222,912 + -0.2
222,912 + +0.4
222,912 + -0.1
222,913 - -3.1
222,913 - -0.9
222,913 - +0.9
222,913 - +0.5
222,914 + -1.8
222,914 + +0.3
222,914 + -2.3
222,914 + -1.0
222,915 - +1.0
222,946 + -0.9
222,968 - +0.8
223,054 - -0.3
223,065 + -2.0
223,082 - -0.9
223,082 - -0.6
223,123 - +1.4
223,126 - +0.7
223,126 - +0.7
223,126 - +0.0
223,141 - -1.1
223,226 - EX28DRAFT_2911 0.51 -0.6
223,235 + EX28DRAFT_2911 0.62 +0.3
223,236 - EX28DRAFT_2911 0.63 -1.0
223,349 - +0.9
223,419 - EX28DRAFT_2912 0.41 -1.5
223,419 - EX28DRAFT_2912 0.41 +0.1
223,451 + EX28DRAFT_2912 0.80 -1.0
223,452 - EX28DRAFT_2912 0.81 +0.3
223,457 + EX28DRAFT_2912 0.88 -0.6
223,458 - EX28DRAFT_2912 0.89 +0.5
223,458 - EX28DRAFT_2912 0.89 +0.5
223,458 - EX28DRAFT_2912 0.89 -0.2
223,478 - -0.4
223,490 - +0.1
223,492 + +0.8
223,493 - +0.3
223,493 - +1.7
223,493 - +0.4
223,534 + -3.6
223,844 - EX28DRAFT_2913 0.13 -0.6
223,844 - EX28DRAFT_2913 0.13 -0.0
223,844 - EX28DRAFT_2913 0.13 +1.4
224,007 + EX28DRAFT_2913 0.29 -0.1
224,008 - EX28DRAFT_2913 0.29 -1.3
224,306 - EX28DRAFT_2913 0.59 +1.7
224,440 + EX28DRAFT_2913 0.72 +0.6

Or see this region's nucleotide sequence