Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2790

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2788 and EX28DRAFT_2789 overlap by 4 nucleotidesEX28DRAFT_2789 and EX28DRAFT_2790 are separated by 269 nucleotidesEX28DRAFT_2790 and EX28DRAFT_2791 are separated by 252 nucleotidesEX28DRAFT_2791 and EX28DRAFT_2792 overlap by 4 nucleotides EX28DRAFT_2788: EX28DRAFT_2788 - ABC-type Mn2+/Zn2+ transport systems, permease components, at 91,918 to 92,778 _2788 EX28DRAFT_2789: EX28DRAFT_2789 - ABC-type Mn/Zn transport systems, ATPase component, at 92,775 to 93,428 _2789 EX28DRAFT_2790: EX28DRAFT_2790 - lytic murein transglycosylase B, at 93,698 to 94,798 _2790 EX28DRAFT_2791: EX28DRAFT_2791 - PTS system, glucitol/sorbitol-specific, IIC component, at 95,051 to 95,614 _2791 EX28DRAFT_2792: EX28DRAFT_2792 - PTS system, glucitol/sorbitol-specific, IIBC component, at 95,611 to 96,570 _2792 Position (kb) 93 94 95Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 92.734 kb on - strandat 92.900 kb on + strand, within EX28DRAFT_2789at 92.900 kb on + strand, within EX28DRAFT_2789at 92.901 kb on - strand, within EX28DRAFT_2789at 92.901 kb on - strand, within EX28DRAFT_2789at 92.901 kb on - strand, within EX28DRAFT_2789at 92.902 kb on + strand, within EX28DRAFT_2789at 92.902 kb on + strand, within EX28DRAFT_2789at 92.902 kb on + strand, within EX28DRAFT_2789at 92.902 kb on + strand, within EX28DRAFT_2789at 92.902 kb on + strand, within EX28DRAFT_2789at 92.902 kb on + strand, within EX28DRAFT_2789at 92.902 kb on + strand, within EX28DRAFT_2789at 92.903 kb on - strand, within EX28DRAFT_2789at 92.903 kb on - strand, within EX28DRAFT_2789at 92.903 kb on - strand, within EX28DRAFT_2789at 92.903 kb on - strand, within EX28DRAFT_2789at 92.903 kb on - strand, within EX28DRAFT_2789at 92.903 kb on - strand, within EX28DRAFT_2789at 92.903 kb on - strand, within EX28DRAFT_2789at 92.903 kb on - strand, within EX28DRAFT_2789at 92.903 kb on - strand, within EX28DRAFT_2789at 92.903 kb on - strand, within EX28DRAFT_2789at 92.903 kb on - strand, within EX28DRAFT_2789at 92.903 kb on - strand, within EX28DRAFT_2789at 92.903 kb on - strand, within EX28DRAFT_2789at 92.903 kb on - strand, within EX28DRAFT_2789at 92.903 kb on - strand, within EX28DRAFT_2789at 92.903 kb on - strand, within EX28DRAFT_2789at 92.957 kb on + strand, within EX28DRAFT_2789at 93.165 kb on + strand, within EX28DRAFT_2789at 93.166 kb on - strand, within EX28DRAFT_2789at 93.166 kb on - strand, within EX28DRAFT_2789at 93.168 kb on + strand, within EX28DRAFT_2789at 93.169 kb on - strand, within EX28DRAFT_2789at 93.169 kb on - strand, within EX28DRAFT_2789at 93.169 kb on - strand, within EX28DRAFT_2789at 93.169 kb on - strand, within EX28DRAFT_2789at 93.169 kb on - strand, within EX28DRAFT_2789at 93.177 kb on + strand, within EX28DRAFT_2789at 93.178 kb on - strand, within EX28DRAFT_2789at 93.279 kb on - strand, within EX28DRAFT_2789at 93.298 kb on - strand, within EX28DRAFT_2789at 93.380 kb on + strandat 93.555 kb on + strandat 93.555 kb on + strandat 93.560 kb on + strandat 93.561 kb on - strandat 93.561 kb on - strandat 93.587 kb on + strandat 93.588 kb on - strandat 93.588 kb on - strandat 93.636 kb on + strandat 93.637 kb on - strandat 93.689 kb on + strandat 93.690 kb on - strandat 93.790 kb on + strandat 93.791 kb on - strandat 93.831 kb on + strand, within EX28DRAFT_2790at 93.936 kb on + strand, within EX28DRAFT_2790at 93.937 kb on - strand, within EX28DRAFT_2790at 94.029 kb on + strand, within EX28DRAFT_2790at 94.076 kb on - strand, within EX28DRAFT_2790at 94.105 kb on - strand, within EX28DRAFT_2790at 94.111 kb on + strand, within EX28DRAFT_2790at 94.111 kb on + strand, within EX28DRAFT_2790at 94.112 kb on - strand, within EX28DRAFT_2790at 94.113 kb on + strand, within EX28DRAFT_2790at 94.233 kb on + strand, within EX28DRAFT_2790at 94.234 kb on - strand, within EX28DRAFT_2790at 94.234 kb on - strand, within EX28DRAFT_2790at 94.234 kb on - strand, within EX28DRAFT_2790at 94.251 kb on + strand, within EX28DRAFT_2790at 94.252 kb on - strand, within EX28DRAFT_2790at 94.255 kb on + strand, within EX28DRAFT_2790at 94.441 kb on + strand, within EX28DRAFT_2790at 94.442 kb on - strand, within EX28DRAFT_2790at 94.442 kb on - strand, within EX28DRAFT_2790at 94.660 kb on + strand, within EX28DRAFT_2790at 94.660 kb on + strand, within EX28DRAFT_2790at 94.661 kb on - strand, within EX28DRAFT_2790at 94.661 kb on - strand, within EX28DRAFT_2790at 94.738 kb on + strandat 94.739 kb on - strandat 94.741 kb on + strandat 94.741 kb on + strandat 94.742 kb on - strandat 94.833 kb on - strandat 94.835 kb on - strandat 94.835 kb on - strandat 95.334 kb on - strand, within EX28DRAFT_2791at 95.346 kb on - strand, within EX28DRAFT_2791at 95.346 kb on - strand, within EX28DRAFT_2791at 95.363 kb on + strand, within EX28DRAFT_2791at 95.486 kb on + strand, within EX28DRAFT_2791at 95.486 kb on + strand, within EX28DRAFT_2791at 95.487 kb on - strand, within EX28DRAFT_2791at 95.487 kb on - strand, within EX28DRAFT_2791at 95.487 kb on - strand, within EX28DRAFT_2791at 95.696 kb on - strandat 95.696 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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92,734 - +0.6
92,900 + EX28DRAFT_2789 0.19 +1.0
92,900 + EX28DRAFT_2789 0.19 -0.2
92,901 - EX28DRAFT_2789 0.19 +0.6
92,901 - EX28DRAFT_2789 0.19 -1.3
92,901 - EX28DRAFT_2789 0.19 +0.2
92,902 + EX28DRAFT_2789 0.19 -0.3
92,902 + EX28DRAFT_2789 0.19 +1.1
92,902 + EX28DRAFT_2789 0.19 +0.9
92,902 + EX28DRAFT_2789 0.19 +3.8
92,902 + EX28DRAFT_2789 0.19 +1.2
92,902 + EX28DRAFT_2789 0.19 +1.0
92,902 + EX28DRAFT_2789 0.19 +0.5
92,903 - EX28DRAFT_2789 0.20 +0.7
92,903 - EX28DRAFT_2789 0.20 +1.2
92,903 - EX28DRAFT_2789 0.20 -1.5
92,903 - EX28DRAFT_2789 0.20 +0.2
92,903 - EX28DRAFT_2789 0.20 +2.1
92,903 - EX28DRAFT_2789 0.20 -0.9
92,903 - EX28DRAFT_2789 0.20 +0.5
92,903 - EX28DRAFT_2789 0.20 -1.9
92,903 - EX28DRAFT_2789 0.20 -0.2
92,903 - EX28DRAFT_2789 0.20 -0.7
92,903 - EX28DRAFT_2789 0.20 -0.7
92,903 - EX28DRAFT_2789 0.20 +0.7
92,903 - EX28DRAFT_2789 0.20 +0.8
92,903 - EX28DRAFT_2789 0.20 +0.6
92,903 - EX28DRAFT_2789 0.20 -1.4
92,903 - EX28DRAFT_2789 0.20 -1.0
92,957 + EX28DRAFT_2789 0.28 -2.0
93,165 + EX28DRAFT_2789 0.60 +1.2
93,166 - EX28DRAFT_2789 0.60 -1.4
93,166 - EX28DRAFT_2789 0.60 -2.2
93,168 + EX28DRAFT_2789 0.60 +0.1
93,169 - EX28DRAFT_2789 0.60 -1.2
93,169 - EX28DRAFT_2789 0.60 -0.1
93,169 - EX28DRAFT_2789 0.60 -1.8
93,169 - EX28DRAFT_2789 0.60 -1.4
93,169 - EX28DRAFT_2789 0.60 +0.5
93,177 + EX28DRAFT_2789 0.61 -0.4
93,178 - EX28DRAFT_2789 0.62 +1.6
93,279 - EX28DRAFT_2789 0.77 -0.1
93,298 - EX28DRAFT_2789 0.80 +0.5
93,380 + +0.5
93,555 + -1.2
93,555 + +0.1
93,560 + +1.8
93,561 - +0.9
93,561 - -0.5
93,587 + +0.2
93,588 - -2.0
93,588 - -0.8
93,636 + +0.2
93,637 - -0.3
93,689 + -0.0
93,690 - -0.1
93,790 + +0.9
93,791 - +0.4
93,831 + EX28DRAFT_2790 0.12 +0.7
93,936 + EX28DRAFT_2790 0.22 +0.0
93,937 - EX28DRAFT_2790 0.22 +1.8
94,029 + EX28DRAFT_2790 0.30 +0.6
94,076 - EX28DRAFT_2790 0.34 +0.1
94,105 - EX28DRAFT_2790 0.37 +1.0
94,111 + EX28DRAFT_2790 0.38 +0.7
94,111 + EX28DRAFT_2790 0.38 +0.4
94,112 - EX28DRAFT_2790 0.38 -0.2
94,113 + EX28DRAFT_2790 0.38 +2.5
94,233 + EX28DRAFT_2790 0.49 +0.6
94,234 - EX28DRAFT_2790 0.49 +1.0
94,234 - EX28DRAFT_2790 0.49 +0.9
94,234 - EX28DRAFT_2790 0.49 +0.8
94,251 + EX28DRAFT_2790 0.50 -0.1
94,252 - EX28DRAFT_2790 0.50 +0.5
94,255 + EX28DRAFT_2790 0.51 -1.5
94,441 + EX28DRAFT_2790 0.67 +0.6
94,442 - EX28DRAFT_2790 0.68 +0.1
94,442 - EX28DRAFT_2790 0.68 -1.0
94,660 + EX28DRAFT_2790 0.87 +0.1
94,660 + EX28DRAFT_2790 0.87 -0.7
94,661 - EX28DRAFT_2790 0.87 +0.1
94,661 - EX28DRAFT_2790 0.87 +0.3
94,738 + +0.8
94,739 - +0.9
94,741 + -0.8
94,741 + +0.6
94,742 - -1.9
94,833 - -0.0
94,835 - +0.8
94,835 - +2.8
95,334 - EX28DRAFT_2791 0.50 -0.6
95,346 - EX28DRAFT_2791 0.52 +0.5
95,346 - EX28DRAFT_2791 0.52 -0.5
95,363 + EX28DRAFT_2791 0.55 -1.2
95,486 + EX28DRAFT_2791 0.77 +0.1
95,486 + EX28DRAFT_2791 0.77 +0.3
95,487 - EX28DRAFT_2791 0.77 -1.3
95,487 - EX28DRAFT_2791 0.77 +0.6
95,487 - EX28DRAFT_2791 0.77 +0.2
95,696 - +1.1
95,696 - +3.5

Or see this region's nucleotide sequence