Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2373

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2371 and EX28DRAFT_2372 overlap by 1 nucleotidesEX28DRAFT_2372 and EX28DRAFT_2373 are separated by 10 nucleotidesEX28DRAFT_2373 and EX28DRAFT_2374 are separated by 9 nucleotides EX28DRAFT_2371: EX28DRAFT_2371 - 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase, at 2,390,946 to 2,391,698 _2371 EX28DRAFT_2372: EX28DRAFT_2372 - Isochorismate hydrolase, at 2,391,698 to 2,392,552 _2372 EX28DRAFT_2373: EX28DRAFT_2373 - 2,3-dihydroxybenzoate-AMP ligase, at 2,392,563 to 2,394,173 _2373 EX28DRAFT_2374: EX28DRAFT_2374 - isochorismate synthase (EC 5.4.4.2), at 2,394,183 to 2,395,358 _2374 Position (kb) 2392 2393 2394 2395Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2391.677 kb on + strandat 2391.978 kb on + strand, within EX28DRAFT_2372at 2391.979 kb on - strand, within EX28DRAFT_2372at 2391.979 kb on - strand, within EX28DRAFT_2372at 2391.979 kb on - strand, within EX28DRAFT_2372at 2392.057 kb on + strand, within EX28DRAFT_2372at 2392.098 kb on + strand, within EX28DRAFT_2372at 2392.100 kb on + strand, within EX28DRAFT_2372at 2392.101 kb on - strand, within EX28DRAFT_2372at 2392.339 kb on + strand, within EX28DRAFT_2372at 2392.431 kb on + strand, within EX28DRAFT_2372at 2392.493 kb on - strandat 2392.903 kb on + strand, within EX28DRAFT_2373at 2392.943 kb on - strand, within EX28DRAFT_2373at 2393.152 kb on + strand, within EX28DRAFT_2373at 2393.153 kb on - strand, within EX28DRAFT_2373at 2393.277 kb on - strand, within EX28DRAFT_2373at 2393.468 kb on - strand, within EX28DRAFT_2373at 2393.468 kb on - strand, within EX28DRAFT_2373at 2393.468 kb on - strand, within EX28DRAFT_2373at 2393.472 kb on - strand, within EX28DRAFT_2373at 2393.472 kb on - strand, within EX28DRAFT_2373at 2393.497 kb on + strand, within EX28DRAFT_2373at 2393.548 kb on + strand, within EX28DRAFT_2373at 2393.549 kb on - strand, within EX28DRAFT_2373at 2393.915 kb on - strand, within EX28DRAFT_2373at 2393.915 kb on - strand, within EX28DRAFT_2373at 2394.158 kb on + strandat 2394.668 kb on + strand, within EX28DRAFT_2374at 2394.690 kb on + strand, within EX28DRAFT_2374at 2394.690 kb on + strand, within EX28DRAFT_2374at 2394.690 kb on + strand, within EX28DRAFT_2374at 2394.691 kb on - strand, within EX28DRAFT_2374at 2395.037 kb on - strand, within EX28DRAFT_2374

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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2,391,677 + -2.9
2,391,978 + EX28DRAFT_2372 0.33 -0.3
2,391,979 - EX28DRAFT_2372 0.33 +0.2
2,391,979 - EX28DRAFT_2372 0.33 +1.1
2,391,979 - EX28DRAFT_2372 0.33 +0.1
2,392,057 + EX28DRAFT_2372 0.42 -2.7
2,392,098 + EX28DRAFT_2372 0.47 +0.5
2,392,100 + EX28DRAFT_2372 0.47 +1.1
2,392,101 - EX28DRAFT_2372 0.47 +0.3
2,392,339 + EX28DRAFT_2372 0.75 +1.7
2,392,431 + EX28DRAFT_2372 0.86 +1.1
2,392,493 - +1.0
2,392,903 + EX28DRAFT_2373 0.21 +0.3
2,392,943 - EX28DRAFT_2373 0.24 -3.6
2,393,152 + EX28DRAFT_2373 0.37 -0.1
2,393,153 - EX28DRAFT_2373 0.37 -0.2
2,393,277 - EX28DRAFT_2373 0.44 -1.7
2,393,468 - EX28DRAFT_2373 0.56 -1.4
2,393,468 - EX28DRAFT_2373 0.56 -1.6
2,393,468 - EX28DRAFT_2373 0.56 +0.7
2,393,472 - EX28DRAFT_2373 0.56 +2.6
2,393,472 - EX28DRAFT_2373 0.56 -0.3
2,393,497 + EX28DRAFT_2373 0.58 -0.1
2,393,548 + EX28DRAFT_2373 0.61 -0.1
2,393,549 - EX28DRAFT_2373 0.61 +1.6
2,393,915 - EX28DRAFT_2373 0.84 +1.1
2,393,915 - EX28DRAFT_2373 0.84 -2.0
2,394,158 + +1.1
2,394,668 + EX28DRAFT_2374 0.41 -0.2
2,394,690 + EX28DRAFT_2374 0.43 +0.6
2,394,690 + EX28DRAFT_2374 0.43 -1.0
2,394,690 + EX28DRAFT_2374 0.43 -0.3
2,394,691 - EX28DRAFT_2374 0.43 -1.1
2,395,037 - EX28DRAFT_2374 0.73 +0.5

Or see this region's nucleotide sequence