Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1872 and EX28DRAFT_1873 are separated by 59 nucleotides EX28DRAFT_1873 and EX28DRAFT_1874 are separated by 150 nucleotides EX28DRAFT_1874 and EX28DRAFT_1875 are separated by 1 nucleotides EX28DRAFT_1875 and EX28DRAFT_1876 are separated by 41 nucleotides
EX28DRAFT_1872: EX28DRAFT_1872 - Glycine/D-amino acid oxidases (deaminating), at 1,885,026 to 1,886,144
_1872
EX28DRAFT_1873: EX28DRAFT_1873 - Protein of unknown function (DUF2770), at 1,886,204 to 1,886,317
_1873
EX28DRAFT_1874: EX28DRAFT_1874 - Cytochrome B561, at 1,886,468 to 1,887,091
_1874
EX28DRAFT_1875: EX28DRAFT_1875 - Uncharacterized conserved protein, at 1,887,093 to 1,887,671
_1875
EX28DRAFT_1876: EX28DRAFT_1876 - Predicted sulfurtransferase, at 1,887,713 to 1,888,762
_1876
Position (kb) 1887
1888 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1886.259 kb on - strand, within EX28DRAFT_1873 at 1886.261 kb on - strand, within EX28DRAFT_1873 at 1886.261 kb on - strand, within EX28DRAFT_1873 at 1886.373 kb on + strand at 1886.396 kb on - strand at 1886.437 kb on + strand at 1886.506 kb on + strand at 1886.562 kb on + strand, within EX28DRAFT_1874 at 1886.569 kb on - strand, within EX28DRAFT_1874 at 1886.584 kb on - strand, within EX28DRAFT_1874 at 1886.643 kb on - strand, within EX28DRAFT_1874 at 1886.645 kb on + strand, within EX28DRAFT_1874 at 1886.677 kb on - strand, within EX28DRAFT_1874 at 1886.680 kb on + strand, within EX28DRAFT_1874 at 1886.681 kb on - strand, within EX28DRAFT_1874 at 1886.681 kb on - strand, within EX28DRAFT_1874 at 1886.817 kb on - strand, within EX28DRAFT_1874 at 1886.854 kb on + strand, within EX28DRAFT_1874 at 1887.035 kb on - strand at 1887.048 kb on + strand at 1887.131 kb on - strand at 1887.131 kb on - strand at 1887.133 kb on + strand at 1887.133 kb on + strand at 1887.166 kb on - strand, within EX28DRAFT_1875 at 1887.243 kb on - strand, within EX28DRAFT_1875 at 1887.320 kb on + strand, within EX28DRAFT_1875 at 1887.321 kb on - strand, within EX28DRAFT_1875 at 1887.407 kb on + strand, within EX28DRAFT_1875 at 1887.452 kb on + strand, within EX28DRAFT_1875 at 1887.506 kb on + strand, within EX28DRAFT_1875 at 1887.591 kb on - strand, within EX28DRAFT_1875 at 1887.656 kb on - strand at 1887.656 kb on - strand at 1887.673 kb on - strand at 1887.711 kb on + strand at 1887.989 kb on - strand, within EX28DRAFT_1876 at 1888.108 kb on + strand, within EX28DRAFT_1876 at 1888.108 kb on + strand, within EX28DRAFT_1876 at 1888.109 kb on - strand, within EX28DRAFT_1876 at 1888.167 kb on + strand, within EX28DRAFT_1876 at 1888.168 kb on - strand, within EX28DRAFT_1876 at 1888.168 kb on - strand, within EX28DRAFT_1876 at 1888.168 kb on - strand, within EX28DRAFT_1876 at 1888.171 kb on + strand, within EX28DRAFT_1876 at 1888.172 kb on - strand, within EX28DRAFT_1876 at 1888.172 kb on - strand, within EX28DRAFT_1876 at 1888.183 kb on + strand, within EX28DRAFT_1876 at 1888.190 kb on - strand, within EX28DRAFT_1876 at 1888.282 kb on - strand, within EX28DRAFT_1876 at 1888.282 kb on - strand, within EX28DRAFT_1876 at 1888.301 kb on - strand, within EX28DRAFT_1876 at 1888.359 kb on + strand, within EX28DRAFT_1876 at 1888.359 kb on + strand, within EX28DRAFT_1876 at 1888.475 kb on - strand, within EX28DRAFT_1876 at 1888.555 kb on + strand, within EX28DRAFT_1876 at 1888.587 kb on + strand, within EX28DRAFT_1876 at 1888.668 kb on + strand at 1888.668 kb on + strand at 1888.668 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 1,886,259 - EX28DRAFT_1873 0.48 -1.0 1,886,261 - EX28DRAFT_1873 0.50 +1.1 1,886,261 - EX28DRAFT_1873 0.50 -0.9 1,886,373 + +1.3 1,886,396 - -1.3 1,886,437 + -1.4 1,886,506 + -0.5 1,886,562 + EX28DRAFT_1874 0.15 -2.3 1,886,569 - EX28DRAFT_1874 0.16 +0.6 1,886,584 - EX28DRAFT_1874 0.19 -1.3 1,886,643 - EX28DRAFT_1874 0.28 -0.6 1,886,645 + EX28DRAFT_1874 0.28 +0.1 1,886,677 - EX28DRAFT_1874 0.33 -0.3 1,886,680 + EX28DRAFT_1874 0.34 -0.2 1,886,681 - EX28DRAFT_1874 0.34 +4.6 1,886,681 - EX28DRAFT_1874 0.34 -0.0 1,886,817 - EX28DRAFT_1874 0.56 +0.7 1,886,854 + EX28DRAFT_1874 0.62 +1.5 1,887,035 - -1.7 1,887,048 + +0.3 1,887,131 - -0.2 1,887,131 - -0.0 1,887,133 + +0.2 1,887,133 + -0.2 1,887,166 - EX28DRAFT_1875 0.13 +3.9 1,887,243 - EX28DRAFT_1875 0.26 +0.6 1,887,320 + EX28DRAFT_1875 0.39 +0.3 1,887,321 - EX28DRAFT_1875 0.39 -1.7 1,887,407 + EX28DRAFT_1875 0.54 -0.2 1,887,452 + EX28DRAFT_1875 0.62 -0.2 1,887,506 + EX28DRAFT_1875 0.71 -0.3 1,887,591 - EX28DRAFT_1875 0.86 +0.0 1,887,656 - +0.7 1,887,656 - -1.5 1,887,673 - -0.9 1,887,711 + +0.6 1,887,989 - EX28DRAFT_1876 0.26 -2.0 1,888,108 + EX28DRAFT_1876 0.38 -0.7 1,888,108 + EX28DRAFT_1876 0.38 -1.4 1,888,109 - EX28DRAFT_1876 0.38 +1.5 1,888,167 + EX28DRAFT_1876 0.43 -1.9 1,888,168 - EX28DRAFT_1876 0.43 -0.6 1,888,168 - EX28DRAFT_1876 0.43 -2.8 1,888,168 - EX28DRAFT_1876 0.43 +0.8 1,888,171 + EX28DRAFT_1876 0.44 -2.7 1,888,172 - EX28DRAFT_1876 0.44 +1.0 1,888,172 - EX28DRAFT_1876 0.44 -2.8 1,888,183 + EX28DRAFT_1876 0.45 +1.2 1,888,190 - EX28DRAFT_1876 0.45 +0.7 1,888,282 - EX28DRAFT_1876 0.54 -0.7 1,888,282 - EX28DRAFT_1876 0.54 -2.2 1,888,301 - EX28DRAFT_1876 0.56 -3.3 1,888,359 + EX28DRAFT_1876 0.62 -0.5 1,888,359 + EX28DRAFT_1876 0.62 -0.3 1,888,475 - EX28DRAFT_1876 0.73 +1.4 1,888,555 + EX28DRAFT_1876 0.80 -0.8 1,888,587 + EX28DRAFT_1876 0.83 +0.9 1,888,668 + -0.1 1,888,668 + -0.8 1,888,668 + +1.1
Or see this region's nucleotide sequence