Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1498

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1496 and EX28DRAFT_1497 overlap by 11 nucleotidesEX28DRAFT_1497 and EX28DRAFT_1498 are separated by 172 nucleotidesEX28DRAFT_1498 and EX28DRAFT_1499 are separated by 214 nucleotides EX28DRAFT_1496: EX28DRAFT_1496 - Amino acid transporters, at 1,510,811 to 1,512,202 _1496 EX28DRAFT_1497: EX28DRAFT_1497 - hypothetical protein, at 1,512,192 to 1,512,386 _1497 EX28DRAFT_1498: EX28DRAFT_1498 - Glutamine synthetase, at 1,512,559 to 1,513,977 _1498 EX28DRAFT_1499: EX28DRAFT_1499 - Predicted glutamine amidotransferases, at 1,514,192 to 1,514,956 _1499 Position (kb) 1512 1513 1514Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1511.581 kb on + strand, within EX28DRAFT_1496at 1511.582 kb on - strand, within EX28DRAFT_1496at 1511.582 kb on - strand, within EX28DRAFT_1496at 1511.696 kb on - strand, within EX28DRAFT_1496at 1511.744 kb on - strand, within EX28DRAFT_1496at 1511.832 kb on + strand, within EX28DRAFT_1496at 1511.833 kb on - strand, within EX28DRAFT_1496at 1511.875 kb on - strand, within EX28DRAFT_1496at 1511.937 kb on + strand, within EX28DRAFT_1496at 1511.938 kb on - strand, within EX28DRAFT_1496at 1512.027 kb on + strand, within EX28DRAFT_1496at 1512.028 kb on - strand, within EX28DRAFT_1496at 1512.028 kb on - strand, within EX28DRAFT_1496at 1512.028 kb on - strand, within EX28DRAFT_1496at 1512.028 kb on - strand, within EX28DRAFT_1496at 1512.077 kb on - strandat 1512.077 kb on - strandat 1512.102 kb on + strandat 1512.193 kb on + strandat 1512.302 kb on - strand, within EX28DRAFT_1497at 1512.368 kb on - strandat 1512.392 kb on - strandat 1512.485 kb on - strandat 1512.515 kb on + strandat 1512.515 kb on + strandat 1512.515 kb on + strandat 1512.515 kb on + strandat 1512.515 kb on + strandat 1512.515 kb on + strandat 1512.516 kb on - strandat 1512.516 kb on - strandat 1512.519 kb on + strandat 1512.519 kb on + strandat 1512.959 kb on + strand, within EX28DRAFT_1498at 1512.959 kb on + strand, within EX28DRAFT_1498at 1513.191 kb on + strand, within EX28DRAFT_1498at 1513.191 kb on + strand, within EX28DRAFT_1498at 1513.192 kb on - strand, within EX28DRAFT_1498at 1513.192 kb on - strand, within EX28DRAFT_1498at 1513.192 kb on - strand, within EX28DRAFT_1498at 1513.631 kb on + strand, within EX28DRAFT_1498at 1513.772 kb on + strand, within EX28DRAFT_1498at 1513.772 kb on + strand, within EX28DRAFT_1498at 1513.773 kb on - strand, within EX28DRAFT_1498at 1513.885 kb on + strandat 1513.889 kb on + strandat 1513.890 kb on - strandat 1513.982 kb on + strandat 1513.982 kb on + strandat 1513.983 kb on - strandat 1514.126 kb on - strandat 1514.218 kb on + strandat 1514.248 kb on + strandat 1514.314 kb on - strand, within EX28DRAFT_1499at 1514.317 kb on + strand, within EX28DRAFT_1499at 1514.318 kb on - strand, within EX28DRAFT_1499at 1514.352 kb on + strand, within EX28DRAFT_1499at 1514.353 kb on - strand, within EX28DRAFT_1499at 1514.388 kb on - strand, within EX28DRAFT_1499at 1514.426 kb on + strand, within EX28DRAFT_1499at 1514.643 kb on + strand, within EX28DRAFT_1499at 1514.643 kb on + strand, within EX28DRAFT_1499at 1514.700 kb on + strand, within EX28DRAFT_1499at 1514.760 kb on + strand, within EX28DRAFT_1499at 1514.962 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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1,511,581 + EX28DRAFT_1496 0.55 +0.8
1,511,582 - EX28DRAFT_1496 0.55 +1.9
1,511,582 - EX28DRAFT_1496 0.55 +0.7
1,511,696 - EX28DRAFT_1496 0.64 -0.8
1,511,744 - EX28DRAFT_1496 0.67 +0.2
1,511,832 + EX28DRAFT_1496 0.73 +0.5
1,511,833 - EX28DRAFT_1496 0.73 -1.0
1,511,875 - EX28DRAFT_1496 0.76 +0.9
1,511,937 + EX28DRAFT_1496 0.81 +0.3
1,511,938 - EX28DRAFT_1496 0.81 -3.7
1,512,027 + EX28DRAFT_1496 0.87 +0.1
1,512,028 - EX28DRAFT_1496 0.87 -2.0
1,512,028 - EX28DRAFT_1496 0.87 +0.7
1,512,028 - EX28DRAFT_1496 0.87 -3.9
1,512,028 - EX28DRAFT_1496 0.87 +0.4
1,512,077 - -0.9
1,512,077 - -0.4
1,512,102 + -0.9
1,512,193 + +0.0
1,512,302 - EX28DRAFT_1497 0.56 -1.5
1,512,368 - -2.9
1,512,392 - +0.2
1,512,485 - -0.3
1,512,515 + +0.1
1,512,515 + -3.1
1,512,515 + -0.8
1,512,515 + -0.6
1,512,515 + +0.4
1,512,515 + -0.5
1,512,516 - -0.7
1,512,516 - -3.6
1,512,519 + +0.3
1,512,519 + +0.0
1,512,959 + EX28DRAFT_1498 0.28 +1.5
1,512,959 + EX28DRAFT_1498 0.28 +0.3
1,513,191 + EX28DRAFT_1498 0.45 +0.6
1,513,191 + EX28DRAFT_1498 0.45 -1.2
1,513,192 - EX28DRAFT_1498 0.45 -2.3
1,513,192 - EX28DRAFT_1498 0.45 -0.7
1,513,192 - EX28DRAFT_1498 0.45 -0.1
1,513,631 + EX28DRAFT_1498 0.76 +1.5
1,513,772 + EX28DRAFT_1498 0.85 +0.8
1,513,772 + EX28DRAFT_1498 0.85 -2.6
1,513,773 - EX28DRAFT_1498 0.86 +1.5
1,513,885 + -0.1
1,513,889 + +1.3
1,513,890 - +0.7
1,513,982 + -0.9
1,513,982 + -0.3
1,513,983 - +1.2
1,514,126 - +0.7
1,514,218 + +0.5
1,514,248 + -2.7
1,514,314 - EX28DRAFT_1499 0.16 +0.8
1,514,317 + EX28DRAFT_1499 0.16 -0.3
1,514,318 - EX28DRAFT_1499 0.16 +0.3
1,514,352 + EX28DRAFT_1499 0.21 -1.1
1,514,353 - EX28DRAFT_1499 0.21 +0.7
1,514,388 - EX28DRAFT_1499 0.26 +0.2
1,514,426 + EX28DRAFT_1499 0.31 +1.2
1,514,643 + EX28DRAFT_1499 0.59 +1.3
1,514,643 + EX28DRAFT_1499 0.59 -0.3
1,514,700 + EX28DRAFT_1499 0.66 -1.3
1,514,760 + EX28DRAFT_1499 0.74 +0.1
1,514,962 - -0.2

Or see this region's nucleotide sequence