Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1373

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1371 and EX28DRAFT_1372 overlap by 4 nucleotidesEX28DRAFT_1372 and EX28DRAFT_1373 are separated by 1 nucleotidesEX28DRAFT_1373 and EX28DRAFT_1374 overlap by 4 nucleotidesEX28DRAFT_1374 and EX28DRAFT_1375 overlap by 4 nucleotides EX28DRAFT_1371: EX28DRAFT_1371 - Cyclopropane fatty acid synthase and related methyltransferases, at 1,386,661 to 1,387,881 _1371 EX28DRAFT_1372: EX28DRAFT_1372 - Uncharacterized conserved protein, at 1,387,878 to 1,388,600 _1372 EX28DRAFT_1373: EX28DRAFT_1373 - Predicted NAD/FAD-binding protein, at 1,388,602 to 1,389,861 _1373 EX28DRAFT_1374: EX28DRAFT_1374 - Short-chain dehydrogenases of various substrate specificities, at 1,389,858 to 1,390,577 _1374 EX28DRAFT_1375: EX28DRAFT_1375 - SnoaL-like domain, at 1,390,574 to 1,391,008 _1375 Position (kb) 1388 1389 1390Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1387.859 kb on - strandat 1387.911 kb on - strandat 1387.912 kb on + strandat 1387.913 kb on - strandat 1387.913 kb on - strandat 1387.954 kb on + strand, within EX28DRAFT_1372at 1387.954 kb on + strand, within EX28DRAFT_1372at 1387.954 kb on + strand, within EX28DRAFT_1372at 1387.955 kb on - strand, within EX28DRAFT_1372at 1388.093 kb on + strand, within EX28DRAFT_1372at 1388.132 kb on - strand, within EX28DRAFT_1372at 1388.209 kb on + strand, within EX28DRAFT_1372at 1388.213 kb on - strand, within EX28DRAFT_1372at 1388.213 kb on - strand, within EX28DRAFT_1372at 1388.290 kb on + strand, within EX28DRAFT_1372at 1388.291 kb on - strand, within EX28DRAFT_1372at 1388.324 kb on - strand, within EX28DRAFT_1372at 1388.520 kb on - strand, within EX28DRAFT_1372at 1388.520 kb on - strand, within EX28DRAFT_1372at 1388.530 kb on + strandat 1388.530 kb on + strandat 1388.928 kb on - strand, within EX28DRAFT_1373at 1388.983 kb on + strand, within EX28DRAFT_1373at 1388.984 kb on - strand, within EX28DRAFT_1373at 1389.106 kb on - strand, within EX28DRAFT_1373at 1389.223 kb on - strand, within EX28DRAFT_1373at 1389.225 kb on - strand, within EX28DRAFT_1373at 1389.252 kb on - strand, within EX28DRAFT_1373at 1389.435 kb on + strand, within EX28DRAFT_1373at 1389.436 kb on - strand, within EX28DRAFT_1373at 1389.575 kb on + strand, within EX28DRAFT_1373at 1389.714 kb on - strand, within EX28DRAFT_1373at 1390.373 kb on - strand, within EX28DRAFT_1374at 1390.635 kb on + strand, within EX28DRAFT_1375at 1390.635 kb on + strand, within EX28DRAFT_1375at 1390.636 kb on - strand, within EX28DRAFT_1375at 1390.656 kb on + strand, within EX28DRAFT_1375at 1390.656 kb on + strand, within EX28DRAFT_1375at 1390.656 kb on + strand, within EX28DRAFT_1375at 1390.656 kb on + strand, within EX28DRAFT_1375at 1390.656 kb on + strand, within EX28DRAFT_1375at 1390.659 kb on + strand, within EX28DRAFT_1375

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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1,387,859 - -0.4
1,387,911 - -1.1
1,387,912 + +0.9
1,387,913 - +1.8
1,387,913 - +0.6
1,387,954 + EX28DRAFT_1372 0.11 +1.0
1,387,954 + EX28DRAFT_1372 0.11 -0.0
1,387,954 + EX28DRAFT_1372 0.11 +0.2
1,387,955 - EX28DRAFT_1372 0.11 +1.0
1,388,093 + EX28DRAFT_1372 0.30 +2.8
1,388,132 - EX28DRAFT_1372 0.35 -2.0
1,388,209 + EX28DRAFT_1372 0.46 +1.0
1,388,213 - EX28DRAFT_1372 0.46 +1.4
1,388,213 - EX28DRAFT_1372 0.46 -1.0
1,388,290 + EX28DRAFT_1372 0.57 -0.7
1,388,291 - EX28DRAFT_1372 0.57 +0.9
1,388,324 - EX28DRAFT_1372 0.62 +0.5
1,388,520 - EX28DRAFT_1372 0.89 +0.5
1,388,520 - EX28DRAFT_1372 0.89 +0.3
1,388,530 + +2.3
1,388,530 + +1.6
1,388,928 - EX28DRAFT_1373 0.26 -1.5
1,388,983 + EX28DRAFT_1373 0.30 +0.4
1,388,984 - EX28DRAFT_1373 0.30 -3.3
1,389,106 - EX28DRAFT_1373 0.40 -0.7
1,389,223 - EX28DRAFT_1373 0.49 +0.5
1,389,225 - EX28DRAFT_1373 0.49 -0.9
1,389,252 - EX28DRAFT_1373 0.52 -0.6
1,389,435 + EX28DRAFT_1373 0.66 +0.0
1,389,436 - EX28DRAFT_1373 0.66 -0.3
1,389,575 + EX28DRAFT_1373 0.77 -0.0
1,389,714 - EX28DRAFT_1373 0.88 +0.4
1,390,373 - EX28DRAFT_1374 0.72 -3.0
1,390,635 + EX28DRAFT_1375 0.14 -1.5
1,390,635 + EX28DRAFT_1375 0.14 -1.2
1,390,636 - EX28DRAFT_1375 0.14 -2.8
1,390,656 + EX28DRAFT_1375 0.19 -0.7
1,390,656 + EX28DRAFT_1375 0.19 +0.6
1,390,656 + EX28DRAFT_1375 0.19 +1.6
1,390,656 + EX28DRAFT_1375 0.19 +0.5
1,390,656 + EX28DRAFT_1375 0.19 -0.1
1,390,659 + EX28DRAFT_1375 0.20 +0.0

Or see this region's nucleotide sequence