Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1132 and EX28DRAFT_1133 are separated by 7 nucleotides EX28DRAFT_1133 and EX28DRAFT_1134 are separated by 41 nucleotides EX28DRAFT_1134 and EX28DRAFT_1135 are separated by 40 nucleotides
EX28DRAFT_1132: EX28DRAFT_1132 - Thiol:disulfide interchange protein, at 1,145,859 to 1,147,883
_1132
EX28DRAFT_1133: EX28DRAFT_1133 - Protein-disulfide isomerase, at 1,147,891 to 1,148,502
_1133
EX28DRAFT_1134: EX28DRAFT_1134 - Protein-disulfide isomerase, at 1,148,544 to 1,149,302
_1134
EX28DRAFT_1135: EX28DRAFT_1135 - Uncharacterized protein conserved in bacteria, at 1,149,343 to 1,150,635
_1135
Position (kb) 1148
1149
1150 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1147.608 kb on - strand, within EX28DRAFT_1132 at 1147.887 kb on + strand at 1147.887 kb on + strand at 1147.887 kb on + strand at 1147.888 kb on - strand at 1147.888 kb on - strand at 1147.909 kb on - strand at 1148.077 kb on + strand, within EX28DRAFT_1133 at 1148.077 kb on + strand, within EX28DRAFT_1133 at 1148.094 kb on + strand, within EX28DRAFT_1133 at 1148.110 kb on + strand, within EX28DRAFT_1133 at 1148.158 kb on - strand, within EX28DRAFT_1133 at 1148.241 kb on + strand, within EX28DRAFT_1133 at 1148.558 kb on - strand at 1148.560 kb on + strand at 1148.561 kb on - strand at 1148.649 kb on - strand, within EX28DRAFT_1134 at 1148.649 kb on - strand, within EX28DRAFT_1134 at 1148.820 kb on + strand, within EX28DRAFT_1134 at 1149.213 kb on + strand, within EX28DRAFT_1134 at 1149.216 kb on + strand, within EX28DRAFT_1134 at 1149.217 kb on - strand, within EX28DRAFT_1134 at 1149.536 kb on + strand, within EX28DRAFT_1135 at 1149.536 kb on + strand, within EX28DRAFT_1135 at 1149.554 kb on + strand, within EX28DRAFT_1135 at 1149.554 kb on + strand, within EX28DRAFT_1135 at 1149.555 kb on - strand, within EX28DRAFT_1135 at 1149.642 kb on - strand, within EX28DRAFT_1135 at 1149.816 kb on + strand, within EX28DRAFT_1135 at 1149.947 kb on + strand, within EX28DRAFT_1135 at 1149.947 kb on + strand, within EX28DRAFT_1135 at 1149.948 kb on - strand, within EX28DRAFT_1135 at 1149.983 kb on + strand, within EX28DRAFT_1135 at 1150.097 kb on + strand, within EX28DRAFT_1135 at 1150.097 kb on + strand, within EX28DRAFT_1135 at 1150.098 kb on - strand, within EX28DRAFT_1135 at 1150.230 kb on + strand, within EX28DRAFT_1135 at 1150.231 kb on - strand, within EX28DRAFT_1135
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 1,147,608 - EX28DRAFT_1132 0.86 -3.5 1,147,887 + -1.2 1,147,887 + -1.3 1,147,887 + +1.0 1,147,888 - -0.8 1,147,888 - +0.0 1,147,909 - +0.5 1,148,077 + EX28DRAFT_1133 0.30 +1.1 1,148,077 + EX28DRAFT_1133 0.30 -1.5 1,148,094 + EX28DRAFT_1133 0.33 +2.5 1,148,110 + EX28DRAFT_1133 0.36 +0.7 1,148,158 - EX28DRAFT_1133 0.44 -0.2 1,148,241 + EX28DRAFT_1133 0.57 +1.3 1,148,558 - -0.9 1,148,560 + +2.8 1,148,561 - +0.0 1,148,649 - EX28DRAFT_1134 0.14 -2.2 1,148,649 - EX28DRAFT_1134 0.14 +0.5 1,148,820 + EX28DRAFT_1134 0.36 -2.1 1,149,213 + EX28DRAFT_1134 0.88 -0.6 1,149,216 + EX28DRAFT_1134 0.89 -0.8 1,149,217 - EX28DRAFT_1134 0.89 -1.3 1,149,536 + EX28DRAFT_1135 0.15 -0.2 1,149,536 + EX28DRAFT_1135 0.15 -3.5 1,149,554 + EX28DRAFT_1135 0.16 -0.3 1,149,554 + EX28DRAFT_1135 0.16 +0.5 1,149,555 - EX28DRAFT_1135 0.16 -3.9 1,149,642 - EX28DRAFT_1135 0.23 +0.7 1,149,816 + EX28DRAFT_1135 0.37 -1.5 1,149,947 + EX28DRAFT_1135 0.47 +1.0 1,149,947 + EX28DRAFT_1135 0.47 -0.8 1,149,948 - EX28DRAFT_1135 0.47 -2.0 1,149,983 + EX28DRAFT_1135 0.49 +0.5 1,150,097 + EX28DRAFT_1135 0.58 +2.2 1,150,097 + EX28DRAFT_1135 0.58 +0.9 1,150,098 - EX28DRAFT_1135 0.58 -0.0 1,150,230 + EX28DRAFT_1135 0.69 -1.4 1,150,231 - EX28DRAFT_1135 0.69 +0.3
Or see this region's nucleotide sequence