Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1027 and EX28DRAFT_1028 are separated by 1 nucleotides EX28DRAFT_1028 and EX28DRAFT_1029 overlap by 11 nucleotides EX28DRAFT_1029 and EX28DRAFT_1030 are separated by 24 nucleotides
EX28DRAFT_1027: EX28DRAFT_1027 - ABC-type spermidine/putrescine transport systems, ATPase components, at 1,034,364 to 1,035,377
_1027
EX28DRAFT_1028: EX28DRAFT_1028 - ABC-type spermidine/putrescine transport system, permease component I, at 1,035,379 to 1,036,323
_1028
EX28DRAFT_1029: EX28DRAFT_1029 - ABC-type spermidine/putrescine transport system, permease component II, at 1,036,313 to 1,037,119
_1029
EX28DRAFT_1030: EX28DRAFT_1030 - 1-pyrroline dehydrogenase, at 1,037,144 to 1,038,568
_1030
Position (kb) 1035
1036
1037 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 1034.403 kb on + strand at 1034.634 kb on - strand, within EX28DRAFT_1027 at 1034.634 kb on - strand, within EX28DRAFT_1027 at 1035.030 kb on + strand, within EX28DRAFT_1027 at 1035.109 kb on + strand, within EX28DRAFT_1027 at 1035.130 kb on - strand, within EX28DRAFT_1027 at 1035.150 kb on - strand, within EX28DRAFT_1027 at 1035.150 kb on - strand, within EX28DRAFT_1027 at 1035.158 kb on + strand, within EX28DRAFT_1027 at 1035.159 kb on - strand, within EX28DRAFT_1027 at 1035.208 kb on - strand, within EX28DRAFT_1027 at 1035.423 kb on - strand at 1035.511 kb on + strand, within EX28DRAFT_1028 at 1035.515 kb on + strand, within EX28DRAFT_1028 at 1035.516 kb on - strand, within EX28DRAFT_1028 at 1035.631 kb on + strand, within EX28DRAFT_1028 at 1035.764 kb on + strand, within EX28DRAFT_1028 at 1035.764 kb on + strand, within EX28DRAFT_1028 at 1035.765 kb on - strand, within EX28DRAFT_1028 at 1035.787 kb on + strand, within EX28DRAFT_1028 at 1035.787 kb on + strand, within EX28DRAFT_1028 at 1035.788 kb on - strand, within EX28DRAFT_1028 at 1035.803 kb on - strand, within EX28DRAFT_1028 at 1035.892 kb on - strand, within EX28DRAFT_1028 at 1035.959 kb on - strand, within EX28DRAFT_1028 at 1036.072 kb on + strand, within EX28DRAFT_1028 at 1036.228 kb on - strand, within EX28DRAFT_1028 at 1036.279 kb on + strand at 1036.404 kb on - strand, within EX28DRAFT_1029 at 1036.719 kb on + strand, within EX28DRAFT_1029 at 1036.760 kb on - strand, within EX28DRAFT_1029 at 1036.926 kb on + strand, within EX28DRAFT_1029 at 1037.118 kb on - strand at 1037.143 kb on + strand at 1037.207 kb on + strand at 1037.207 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 1,034,403 + -2.6 1,034,634 - EX28DRAFT_1027 0.27 -0.2 1,034,634 - EX28DRAFT_1027 0.27 -1.2 1,035,030 + EX28DRAFT_1027 0.66 -0.4 1,035,109 + EX28DRAFT_1027 0.73 -2.1 1,035,130 - EX28DRAFT_1027 0.76 -4.8 1,035,150 - EX28DRAFT_1027 0.78 +0.5 1,035,150 - EX28DRAFT_1027 0.78 +1.6 1,035,158 + EX28DRAFT_1027 0.78 +0.1 1,035,159 - EX28DRAFT_1027 0.78 +0.6 1,035,208 - EX28DRAFT_1027 0.83 -1.0 1,035,423 - -1.3 1,035,511 + EX28DRAFT_1028 0.14 -1.1 1,035,515 + EX28DRAFT_1028 0.14 -0.9 1,035,516 - EX28DRAFT_1028 0.14 -0.8 1,035,631 + EX28DRAFT_1028 0.27 -0.5 1,035,764 + EX28DRAFT_1028 0.41 -0.5 1,035,764 + EX28DRAFT_1028 0.41 -1.6 1,035,765 - EX28DRAFT_1028 0.41 +0.9 1,035,787 + EX28DRAFT_1028 0.43 -0.6 1,035,787 + EX28DRAFT_1028 0.43 -4.1 1,035,788 - EX28DRAFT_1028 0.43 +0.2 1,035,803 - EX28DRAFT_1028 0.45 +2.2 1,035,892 - EX28DRAFT_1028 0.54 -2.4 1,035,959 - EX28DRAFT_1028 0.61 +0.7 1,036,072 + EX28DRAFT_1028 0.73 -0.2 1,036,228 - EX28DRAFT_1028 0.90 +0.5 1,036,279 + +0.2 1,036,404 - EX28DRAFT_1029 0.11 +0.1 1,036,719 + EX28DRAFT_1029 0.50 +0.9 1,036,760 - EX28DRAFT_1029 0.55 +0.7 1,036,926 + EX28DRAFT_1029 0.76 +0.3 1,037,118 - -0.2 1,037,143 + +0.3 1,037,207 + +1.1 1,037,207 + +1.7
Or see this region's nucleotide sequence