Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0883 and EX28DRAFT_0884 overlap by 4 nucleotides EX28DRAFT_0884 and EX28DRAFT_0885 are separated by 66 nucleotides EX28DRAFT_0885 and EX28DRAFT_0886 are separated by 31 nucleotides EX28DRAFT_0886 and EX28DRAFT_0887 overlap by 41 nucleotides
EX28DRAFT_0883: EX28DRAFT_0883 - hypothetical protein, at 892,671 to 892,841
_0883
EX28DRAFT_0884: EX28DRAFT_0884 - hypothetical protein, at 892,838 to 893,338
_0884
EX28DRAFT_0885: EX28DRAFT_0885 - Protein of unknown function (DUF2732), at 893,405 to 893,614
_0885
EX28DRAFT_0886: EX28DRAFT_0886 - hypothetical protein, at 893,646 to 893,909
_0886
EX28DRAFT_0887: EX28DRAFT_0887 - Bacteriophage replication gene A protein (GPA), at 893,869 to 896,226
_0887
Position (kb) 893
894 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 892.671 kb on - strand at 892.766 kb on - strand, within EX28DRAFT_0883 at 892.766 kb on - strand, within EX28DRAFT_0883 at 892.904 kb on + strand, within EX28DRAFT_0884 at 892.905 kb on - strand, within EX28DRAFT_0884 at 892.996 kb on - strand, within EX28DRAFT_0884 at 893.197 kb on + strand, within EX28DRAFT_0884 at 893.198 kb on - strand, within EX28DRAFT_0884 at 893.296 kb on + strand at 893.297 kb on - strand at 893.305 kb on - strand at 893.327 kb on + strand at 893.332 kb on - strand at 893.336 kb on + strand at 893.399 kb on - strand at 893.527 kb on + strand, within EX28DRAFT_0885 at 893.569 kb on - strand, within EX28DRAFT_0885 at 893.569 kb on - strand, within EX28DRAFT_0885 at 893.572 kb on - strand, within EX28DRAFT_0885 at 893.572 kb on - strand, within EX28DRAFT_0885 at 893.572 kb on - strand, within EX28DRAFT_0885 at 893.653 kb on + strand at 893.666 kb on + strand at 893.676 kb on + strand, within EX28DRAFT_0886 at 893.677 kb on - strand, within EX28DRAFT_0886 at 893.798 kb on + strand, within EX28DRAFT_0886 at 893.798 kb on + strand, within EX28DRAFT_0886 at 893.798 kb on + strand, within EX28DRAFT_0886 at 893.798 kb on + strand, within EX28DRAFT_0886 at 893.798 kb on + strand, within EX28DRAFT_0886 at 893.799 kb on - strand, within EX28DRAFT_0886 at 893.904 kb on - strand at 893.907 kb on + strand at 893.908 kb on - strand at 893.910 kb on + strand at 893.996 kb on - strand at 893.996 kb on - strand at 894.124 kb on - strand, within EX28DRAFT_0887 at 894.124 kb on - strand, within EX28DRAFT_0887 at 894.124 kb on - strand, within EX28DRAFT_0887 at 894.124 kb on - strand, within EX28DRAFT_0887 at 894.133 kb on + strand, within EX28DRAFT_0887 at 894.135 kb on + strand, within EX28DRAFT_0887 at 894.135 kb on + strand, within EX28DRAFT_0887 at 894.136 kb on - strand, within EX28DRAFT_0887 at 894.164 kb on + strand, within EX28DRAFT_0887 at 894.164 kb on + strand, within EX28DRAFT_0887 at 894.176 kb on - strand, within EX28DRAFT_0887 at 894.289 kb on + strand, within EX28DRAFT_0887 at 894.289 kb on + strand, within EX28DRAFT_0887 at 894.290 kb on - strand, within EX28DRAFT_0887 at 894.306 kb on + strand, within EX28DRAFT_0887 at 894.307 kb on - strand, within EX28DRAFT_0887 at 894.345 kb on - strand, within EX28DRAFT_0887 at 894.367 kb on + strand, within EX28DRAFT_0887 at 894.378 kb on - strand, within EX28DRAFT_0887 at 894.378 kb on - strand, within EX28DRAFT_0887 at 894.447 kb on - strand, within EX28DRAFT_0887 at 894.448 kb on + strand, within EX28DRAFT_0887 at 894.645 kb on - strand, within EX28DRAFT_0887 at 894.711 kb on + strand, within EX28DRAFT_0887 at 894.765 kb on + strand, within EX28DRAFT_0887 at 894.766 kb on - strand, within EX28DRAFT_0887 at 894.795 kb on + strand, within EX28DRAFT_0887 at 894.795 kb on + strand, within EX28DRAFT_0887 at 894.813 kb on - strand, within EX28DRAFT_0887 at 894.813 kb on - strand, within EX28DRAFT_0887 at 894.837 kb on + strand, within EX28DRAFT_0887 at 894.888 kb on + strand, within EX28DRAFT_0887 at 894.889 kb on - strand, within EX28DRAFT_0887
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 892,671 - -2.1 892,766 - EX28DRAFT_0883 0.56 +0.4 892,766 - EX28DRAFT_0883 0.56 +1.0 892,904 + EX28DRAFT_0884 0.13 -1.1 892,905 - EX28DRAFT_0884 0.13 +0.9 892,996 - EX28DRAFT_0884 0.32 +0.3 893,197 + EX28DRAFT_0884 0.72 -1.6 893,198 - EX28DRAFT_0884 0.72 +0.9 893,296 + -1.3 893,297 - +0.8 893,305 - +0.7 893,327 + -0.7 893,332 - -0.4 893,336 + +0.1 893,399 - +0.6 893,527 + EX28DRAFT_0885 0.58 +1.7 893,569 - EX28DRAFT_0885 0.78 +0.2 893,569 - EX28DRAFT_0885 0.78 -0.1 893,572 - EX28DRAFT_0885 0.80 -0.1 893,572 - EX28DRAFT_0885 0.80 +1.7 893,572 - EX28DRAFT_0885 0.80 -0.0 893,653 + +0.3 893,666 + +1.1 893,676 + EX28DRAFT_0886 0.11 -0.4 893,677 - EX28DRAFT_0886 0.12 -2.1 893,798 + EX28DRAFT_0886 0.58 -1.8 893,798 + EX28DRAFT_0886 0.58 -1.1 893,798 + EX28DRAFT_0886 0.58 -1.8 893,798 + EX28DRAFT_0886 0.58 +0.6 893,798 + EX28DRAFT_0886 0.58 -0.2 893,799 - EX28DRAFT_0886 0.58 -1.1 893,904 - +0.1 893,907 + +1.3 893,908 - -2.2 893,910 + -0.3 893,996 - -4.3 893,996 - -0.0 894,124 - EX28DRAFT_0887 0.11 +0.1 894,124 - EX28DRAFT_0887 0.11 +0.6 894,124 - EX28DRAFT_0887 0.11 -0.1 894,124 - EX28DRAFT_0887 0.11 +1.4 894,133 + EX28DRAFT_0887 0.11 -3.2 894,135 + EX28DRAFT_0887 0.11 -4.6 894,135 + EX28DRAFT_0887 0.11 -0.1 894,136 - EX28DRAFT_0887 0.11 +1.2 894,164 + EX28DRAFT_0887 0.13 -0.9 894,164 + EX28DRAFT_0887 0.13 +1.9 894,176 - EX28DRAFT_0887 0.13 +2.5 894,289 + EX28DRAFT_0887 0.18 +1.3 894,289 + EX28DRAFT_0887 0.18 +0.6 894,290 - EX28DRAFT_0887 0.18 +0.7 894,306 + EX28DRAFT_0887 0.19 -2.5 894,307 - EX28DRAFT_0887 0.19 +0.2 894,345 - EX28DRAFT_0887 0.20 +0.6 894,367 + EX28DRAFT_0887 0.21 +0.5 894,378 - EX28DRAFT_0887 0.22 +0.5 894,378 - EX28DRAFT_0887 0.22 -0.7 894,447 - EX28DRAFT_0887 0.25 -1.8 894,448 + EX28DRAFT_0887 0.25 -0.6 894,645 - EX28DRAFT_0887 0.33 +0.3 894,711 + EX28DRAFT_0887 0.36 +0.1 894,765 + EX28DRAFT_0887 0.38 +0.8 894,766 - EX28DRAFT_0887 0.38 -0.9 894,795 + EX28DRAFT_0887 0.39 +3.7 894,795 + EX28DRAFT_0887 0.39 +3.6 894,813 - EX28DRAFT_0887 0.40 +0.6 894,813 - EX28DRAFT_0887 0.40 +1.6 894,837 + EX28DRAFT_0887 0.41 -0.3 894,888 + EX28DRAFT_0887 0.43 +6.0 894,889 - EX28DRAFT_0887 0.43 -0.7
Or see this region's nucleotide sequence