Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0869 and EX28DRAFT_0870 are separated by 14 nucleotides EX28DRAFT_0870 and EX28DRAFT_0871 are separated by 11 nucleotides EX28DRAFT_0871 and EX28DRAFT_0872 overlap by 4 nucleotides
EX28DRAFT_0869: EX28DRAFT_0869 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 882,514 to 883,434
_0869
EX28DRAFT_0870: EX28DRAFT_0870 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 883,449 to 884,357
_0870
EX28DRAFT_0871: EX28DRAFT_0871 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain, at 884,369 to 885,382
_0871
EX28DRAFT_0872: EX28DRAFT_0872 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain, at 885,379 to 886,383
_0872
Position (kb) 884
885
886 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 883.507 kb on + strand at 883.635 kb on - strand, within EX28DRAFT_0870 at 883.695 kb on + strand, within EX28DRAFT_0870 at 883.754 kb on + strand, within EX28DRAFT_0870 at 883.992 kb on - strand, within EX28DRAFT_0870 at 884.034 kb on - strand, within EX28DRAFT_0870 at 884.059 kb on + strand, within EX28DRAFT_0870 at 884.122 kb on - strand, within EX28DRAFT_0870 at 884.122 kb on - strand, within EX28DRAFT_0870 at 884.456 kb on - strand at 884.476 kb on + strand, within EX28DRAFT_0871 at 884.477 kb on - strand, within EX28DRAFT_0871 at 884.727 kb on - strand, within EX28DRAFT_0871 at 884.728 kb on + strand, within EX28DRAFT_0871 at 884.851 kb on + strand, within EX28DRAFT_0871 at 884.852 kb on - strand, within EX28DRAFT_0871 at 884.852 kb on - strand, within EX28DRAFT_0871 at 884.884 kb on + strand, within EX28DRAFT_0871 at 884.953 kb on + strand, within EX28DRAFT_0871 at 885.095 kb on + strand, within EX28DRAFT_0871 at 885.140 kb on + strand, within EX28DRAFT_0871 at 885.140 kb on + strand, within EX28DRAFT_0871 at 885.141 kb on - strand, within EX28DRAFT_0871 at 885.390 kb on - strand at 885.730 kb on - strand, within EX28DRAFT_0872 at 885.730 kb on - strand, within EX28DRAFT_0872 at 885.769 kb on + strand, within EX28DRAFT_0872 at 885.895 kb on - strand, within EX28DRAFT_0872 at 885.895 kb on - strand, within EX28DRAFT_0872 at 885.901 kb on - strand, within EX28DRAFT_0872 at 886.093 kb on + strand, within EX28DRAFT_0872 at 886.094 kb on - strand, within EX28DRAFT_0872 at 886.094 kb on - strand, within EX28DRAFT_0872 at 886.094 kb on - strand, within EX28DRAFT_0872 at 886.094 kb on - strand, within EX28DRAFT_0872 at 886.123 kb on + strand, within EX28DRAFT_0872 at 886.123 kb on + strand, within EX28DRAFT_0872 at 886.136 kb on - strand, within EX28DRAFT_0872 at 886.140 kb on + strand, within EX28DRAFT_0872 at 886.140 kb on + strand, within EX28DRAFT_0872 at 886.140 kb on + strand, within EX28DRAFT_0872 at 886.213 kb on - strand, within EX28DRAFT_0872 at 886.314 kb on + strand at 886.380 kb on - strand at 886.380 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 883,507 + +0.5 883,635 - EX28DRAFT_0870 0.20 -0.5 883,695 + EX28DRAFT_0870 0.27 +0.5 883,754 + EX28DRAFT_0870 0.34 -0.4 883,992 - EX28DRAFT_0870 0.60 +2.1 884,034 - EX28DRAFT_0870 0.64 +0.2 884,059 + EX28DRAFT_0870 0.67 -0.4 884,122 - EX28DRAFT_0870 0.74 -0.9 884,122 - EX28DRAFT_0870 0.74 -3.8 884,456 - -1.2 884,476 + EX28DRAFT_0871 0.11 +0.6 884,477 - EX28DRAFT_0871 0.11 -1.0 884,727 - EX28DRAFT_0871 0.35 -3.5 884,728 + EX28DRAFT_0871 0.35 +1.4 884,851 + EX28DRAFT_0871 0.48 -0.3 884,852 - EX28DRAFT_0871 0.48 -1.3 884,852 - EX28DRAFT_0871 0.48 -1.8 884,884 + EX28DRAFT_0871 0.51 -2.1 884,953 + EX28DRAFT_0871 0.58 +0.2 885,095 + EX28DRAFT_0871 0.72 -0.7 885,140 + EX28DRAFT_0871 0.76 -2.7 885,140 + EX28DRAFT_0871 0.76 +0.7 885,141 - EX28DRAFT_0871 0.76 -0.0 885,390 - +0.1 885,730 - EX28DRAFT_0872 0.35 +1.2 885,730 - EX28DRAFT_0872 0.35 -0.3 885,769 + EX28DRAFT_0872 0.39 +0.5 885,895 - EX28DRAFT_0872 0.51 +0.3 885,895 - EX28DRAFT_0872 0.51 +0.5 885,901 - EX28DRAFT_0872 0.52 +1.4 886,093 + EX28DRAFT_0872 0.71 -0.0 886,094 - EX28DRAFT_0872 0.71 +0.9 886,094 - EX28DRAFT_0872 0.71 +0.5 886,094 - EX28DRAFT_0872 0.71 -2.8 886,094 - EX28DRAFT_0872 0.71 -2.6 886,123 + EX28DRAFT_0872 0.74 -0.9 886,123 + EX28DRAFT_0872 0.74 -0.2 886,136 - EX28DRAFT_0872 0.75 +1.2 886,140 + EX28DRAFT_0872 0.76 +0.2 886,140 + EX28DRAFT_0872 0.76 +0.5 886,140 + EX28DRAFT_0872 0.76 -1.6 886,213 - EX28DRAFT_0872 0.83 +0.0 886,314 + +1.9 886,380 - +0.0 886,380 - -1.7
Or see this region's nucleotide sequence