Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0864 and EX28DRAFT_0865 are separated by 65 nucleotides EX28DRAFT_0865 and EX28DRAFT_0866 are separated by 478 nucleotides
EX28DRAFT_0864: EX28DRAFT_0864 - thymidine kinase (EC 2.7.1.21), at 875,542 to 876,156
_0864
EX28DRAFT_0865: EX28DRAFT_0865 - Alcohol dehydrogenase, class IV, at 876,222 to 878,900
_0865
EX28DRAFT_0866: EX28DRAFT_0866 - membrane protein, MarC family, at 879,379 to 880,026
_0866
Position (kb) 876
877
878
879 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 875.257 kb on - strand at 875.279 kb on - strand at 875.279 kb on - strand at 875.289 kb on + strand at 875.296 kb on + strand at 875.297 kb on - strand at 875.361 kb on - strand at 875.363 kb on - strand at 875.390 kb on - strand at 875.464 kb on + strand at 875.554 kb on + strand at 875.554 kb on + strand at 875.555 kb on - strand at 875.618 kb on - strand, within EX28DRAFT_0864 at 875.647 kb on + strand, within EX28DRAFT_0864 at 875.648 kb on - strand, within EX28DRAFT_0864 at 875.650 kb on - strand, within EX28DRAFT_0864 at 875.761 kb on - strand, within EX28DRAFT_0864 at 876.056 kb on + strand, within EX28DRAFT_0864 at 876.057 kb on - strand, within EX28DRAFT_0864 at 876.057 kb on - strand, within EX28DRAFT_0864 at 876.073 kb on + strand, within EX28DRAFT_0864 at 876.097 kb on + strand at 876.098 kb on - strand at 876.100 kb on - strand at 876.171 kb on + strand at 876.171 kb on + strand at 876.220 kb on - strand at 876.220 kb on - strand at 876.314 kb on - strand at 876.377 kb on + strand at 876.378 kb on - strand at 876.410 kb on + strand at 876.410 kb on + strand at 876.410 kb on + strand at 876.411 kb on - strand at 876.411 kb on - strand at 876.411 kb on - strand at 876.414 kb on + strand at 876.415 kb on - strand at 876.415 kb on - strand at 876.604 kb on + strand, within EX28DRAFT_0865 at 876.605 kb on - strand, within EX28DRAFT_0865 at 876.648 kb on - strand, within EX28DRAFT_0865 at 876.728 kb on + strand, within EX28DRAFT_0865 at 876.779 kb on + strand, within EX28DRAFT_0865 at 876.779 kb on + strand, within EX28DRAFT_0865 at 876.916 kb on + strand, within EX28DRAFT_0865 at 876.916 kb on + strand, within EX28DRAFT_0865 at 876.917 kb on - strand, within EX28DRAFT_0865 at 876.917 kb on - strand, within EX28DRAFT_0865 at 877.071 kb on + strand, within EX28DRAFT_0865 at 877.159 kb on + strand, within EX28DRAFT_0865 at 877.160 kb on - strand, within EX28DRAFT_0865 at 877.160 kb on - strand, within EX28DRAFT_0865 at 877.163 kb on + strand, within EX28DRAFT_0865 at 877.182 kb on - strand, within EX28DRAFT_0865 at 877.225 kb on + strand, within EX28DRAFT_0865 at 877.225 kb on + strand, within EX28DRAFT_0865 at 877.226 kb on - strand, within EX28DRAFT_0865 at 877.226 kb on - strand, within EX28DRAFT_0865 at 877.226 kb on - strand, within EX28DRAFT_0865 at 877.305 kb on - strand, within EX28DRAFT_0865 at 877.523 kb on + strand, within EX28DRAFT_0865 at 877.524 kb on - strand, within EX28DRAFT_0865 at 877.675 kb on + strand, within EX28DRAFT_0865 at 877.722 kb on - strand, within EX28DRAFT_0865 at 877.722 kb on - strand, within EX28DRAFT_0865 at 877.871 kb on - strand, within EX28DRAFT_0865 at 877.874 kb on + strand, within EX28DRAFT_0865 at 877.875 kb on - strand, within EX28DRAFT_0865 at 877.875 kb on - strand, within EX28DRAFT_0865 at 878.126 kb on - strand, within EX28DRAFT_0865 at 878.293 kb on + strand, within EX28DRAFT_0865 at 878.293 kb on + strand, within EX28DRAFT_0865 at 878.294 kb on - strand, within EX28DRAFT_0865 at 878.447 kb on + strand, within EX28DRAFT_0865 at 878.448 kb on - strand, within EX28DRAFT_0865 at 878.448 kb on - strand, within EX28DRAFT_0865 at 878.540 kb on + strand, within EX28DRAFT_0865 at 878.540 kb on + strand, within EX28DRAFT_0865 at 878.559 kb on - strand, within EX28DRAFT_0865 at 878.662 kb on + strand at 878.663 kb on - strand at 878.672 kb on - strand at 878.675 kb on + strand at 878.676 kb on - strand at 878.708 kb on + strand at 878.708 kb on + strand at 878.804 kb on + strand at 878.804 kb on + strand at 878.834 kb on - strand at 878.888 kb on + strand at 878.888 kb on + strand at 878.889 kb on - strand at 878.901 kb on - strand at 878.915 kb on - strand at 878.921 kb on + strand at 878.950 kb on - strand at 878.962 kb on - strand at 879.030 kb on + strand at 879.039 kb on - strand at 879.118 kb on + strand at 879.204 kb on - strand at 879.241 kb on - strand at 879.242 kb on + strand at 879.242 kb on + strand at 879.242 kb on + strand at 879.242 kb on + strand at 879.242 kb on + strand at 879.243 kb on - strand at 879.246 kb on + strand at 879.247 kb on - strand at 879.248 kb on + strand at 879.249 kb on - strand at 879.252 kb on + strand at 879.297 kb on + strand at 879.298 kb on - strand at 879.298 kb on - strand at 879.306 kb on - strand at 879.306 kb on - strand at 879.409 kb on + strand at 879.410 kb on - strand at 879.475 kb on - strand, within EX28DRAFT_0866 at 879.477 kb on + strand, within EX28DRAFT_0866 at 879.487 kb on + strand, within EX28DRAFT_0866 at 879.487 kb on + strand, within EX28DRAFT_0866 at 879.511 kb on - strand, within EX28DRAFT_0866 at 879.511 kb on - strand, within EX28DRAFT_0866 at 879.539 kb on + strand, within EX28DRAFT_0866 at 879.539 kb on + strand, within EX28DRAFT_0866 at 879.540 kb on - strand, within EX28DRAFT_0866 at 879.540 kb on - strand, within EX28DRAFT_0866 at 879.543 kb on + strand, within EX28DRAFT_0866 at 879.543 kb on + strand, within EX28DRAFT_0866 at 879.544 kb on - strand, within EX28DRAFT_0866 at 879.548 kb on + strand, within EX28DRAFT_0866 at 879.549 kb on - strand, within EX28DRAFT_0866 at 879.549 kb on - strand, within EX28DRAFT_0866 at 879.549 kb on - strand, within EX28DRAFT_0866 at 879.730 kb on - strand, within EX28DRAFT_0866
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 875,257 - +4.1 875,279 - +3.2 875,279 - +6.3 875,289 + -0.8 875,296 + +3.1 875,297 - +6.1 875,361 - +1.7 875,363 - -1.2 875,390 - -0.7 875,464 + +0.0 875,554 + -2.8 875,554 + +0.8 875,555 - -0.2 875,618 - EX28DRAFT_0864 0.12 +2.4 875,647 + EX28DRAFT_0864 0.17 +0.5 875,648 - EX28DRAFT_0864 0.17 +1.8 875,650 - EX28DRAFT_0864 0.18 +1.9 875,761 - EX28DRAFT_0864 0.36 +0.8 876,056 + EX28DRAFT_0864 0.84 -1.1 876,057 - EX28DRAFT_0864 0.84 -0.3 876,057 - EX28DRAFT_0864 0.84 +1.8 876,073 + EX28DRAFT_0864 0.86 +0.3 876,097 + +1.8 876,098 - +2.5 876,100 - +1.3 876,171 + -1.4 876,171 + +0.3 876,220 - +0.6 876,220 - -0.9 876,314 - +3.0 876,377 + +0.4 876,378 - +3.3 876,410 + -0.7 876,410 + +1.2 876,410 + +1.1 876,411 - +0.5 876,411 - +0.8 876,411 - -0.5 876,414 + +0.8 876,415 - +1.1 876,415 - +0.6 876,604 + EX28DRAFT_0865 0.14 -0.4 876,605 - EX28DRAFT_0865 0.14 +0.6 876,648 - EX28DRAFT_0865 0.16 +0.8 876,728 + EX28DRAFT_0865 0.19 +1.3 876,779 + EX28DRAFT_0865 0.21 +0.5 876,779 + EX28DRAFT_0865 0.21 +0.5 876,916 + EX28DRAFT_0865 0.26 +0.3 876,916 + EX28DRAFT_0865 0.26 -0.3 876,917 - EX28DRAFT_0865 0.26 +1.3 876,917 - EX28DRAFT_0865 0.26 +1.6 877,071 + EX28DRAFT_0865 0.32 -2.2 877,159 + EX28DRAFT_0865 0.35 -0.7 877,160 - EX28DRAFT_0865 0.35 -0.0 877,160 - EX28DRAFT_0865 0.35 +0.8 877,163 + EX28DRAFT_0865 0.35 +0.6 877,182 - EX28DRAFT_0865 0.36 -0.9 877,225 + EX28DRAFT_0865 0.37 -4.1 877,225 + EX28DRAFT_0865 0.37 -0.5 877,226 - EX28DRAFT_0865 0.37 +1.8 877,226 - EX28DRAFT_0865 0.37 +0.2 877,226 - EX28DRAFT_0865 0.37 +0.8 877,305 - EX28DRAFT_0865 0.40 -1.2 877,523 + EX28DRAFT_0865 0.49 +0.1 877,524 - EX28DRAFT_0865 0.49 +0.5 877,675 + EX28DRAFT_0865 0.54 +0.8 877,722 - EX28DRAFT_0865 0.56 +0.1 877,722 - EX28DRAFT_0865 0.56 -1.1 877,871 - EX28DRAFT_0865 0.62 +0.2 877,874 + EX28DRAFT_0865 0.62 +0.6 877,875 - EX28DRAFT_0865 0.62 +1.2 877,875 - EX28DRAFT_0865 0.62 -1.4 878,126 - EX28DRAFT_0865 0.71 +0.6 878,293 + EX28DRAFT_0865 0.77 -0.5 878,293 + EX28DRAFT_0865 0.77 -0.1 878,294 - EX28DRAFT_0865 0.77 -0.1 878,447 + EX28DRAFT_0865 0.83 +0.5 878,448 - EX28DRAFT_0865 0.83 -0.8 878,448 - EX28DRAFT_0865 0.83 +0.5 878,540 + EX28DRAFT_0865 0.87 -2.2 878,540 + EX28DRAFT_0865 0.87 -2.1 878,559 - EX28DRAFT_0865 0.87 -1.9 878,662 + -2.6 878,663 - +1.3 878,672 - -2.8 878,675 + -2.6 878,676 - +2.1 878,708 + -1.5 878,708 + -2.1 878,804 + +0.8 878,804 + -3.0 878,834 - +0.4 878,888 + +0.2 878,888 + +1.1 878,889 - -0.8 878,901 - -0.2 878,915 - +0.0 878,921 + -0.3 878,950 - +0.2 878,962 - -1.2 879,030 + +0.5 879,039 - +0.3 879,118 + +0.1 879,204 - +3.3 879,241 - -1.6 879,242 + +0.7 879,242 + +0.1 879,242 + -0.2 879,242 + +1.8 879,242 + +0.4 879,243 - +0.0 879,246 + -1.6 879,247 - -0.2 879,248 + -2.1 879,249 - +0.7 879,252 + +0.9 879,297 + -0.1 879,298 - -0.6 879,298 - +0.2 879,306 - +0.4 879,306 - -0.7 879,409 + +0.2 879,410 - +1.6 879,475 - EX28DRAFT_0866 0.15 -1.4 879,477 + EX28DRAFT_0866 0.15 -0.4 879,487 + EX28DRAFT_0866 0.17 -0.3 879,487 + EX28DRAFT_0866 0.17 -2.1 879,511 - EX28DRAFT_0866 0.20 +0.4 879,511 - EX28DRAFT_0866 0.20 +0.7 879,539 + EX28DRAFT_0866 0.25 -0.9 879,539 + EX28DRAFT_0866 0.25 -0.4 879,540 - EX28DRAFT_0866 0.25 +0.7 879,540 - EX28DRAFT_0866 0.25 +0.5 879,543 + EX28DRAFT_0866 0.25 +1.1 879,543 + EX28DRAFT_0866 0.25 -4.1 879,544 - EX28DRAFT_0866 0.25 +0.6 879,548 + EX28DRAFT_0866 0.26 +0.3 879,549 - EX28DRAFT_0866 0.26 +1.3 879,549 - EX28DRAFT_0866 0.26 +1.1 879,549 - EX28DRAFT_0866 0.26 +1.6 879,730 - EX28DRAFT_0866 0.54 -1.1
Or see this region's nucleotide sequence