Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0830 and EX28DRAFT_0831 overlap by 1 nucleotides EX28DRAFT_0831 and EX28DRAFT_0832 overlap by 4 nucleotides EX28DRAFT_0832 and EX28DRAFT_0833 are separated by 3 nucleotides EX28DRAFT_0833 and EX28DRAFT_0834 are separated by 36 nucleotides
EX28DRAFT_0830: EX28DRAFT_0830 - peptide chain release factor 1, at 834,590 to 835,672
_0830
EX28DRAFT_0831: EX28DRAFT_0831 - protein-(glutamine-N5) methyltransferase, release factor-specific, at 835,672 to 836,502
_0831
EX28DRAFT_0832: EX28DRAFT_0832 - Uncharacterized protein conserved in bacteria, at 836,499 to 836,891
_0832
EX28DRAFT_0833: EX28DRAFT_0833 - Uncharacterized conserved protein, at 836,895 to 837,704
_0833
EX28DRAFT_0834: EX28DRAFT_0834 - 3-deoxy-8-phosphooctulonate synthase, at 837,741 to 838,595
_0834
Position (kb) 836
837 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 835.631 kb on + strand at 836.093 kb on + strand, within EX28DRAFT_0831 at 836.691 kb on + strand, within EX28DRAFT_0832 at 836.703 kb on - strand, within EX28DRAFT_0832 at 836.703 kb on - strand, within EX28DRAFT_0832 at 836.703 kb on - strand, within EX28DRAFT_0832 at 836.703 kb on - strand, within EX28DRAFT_0832 at 836.751 kb on + strand, within EX28DRAFT_0832 at 836.844 kb on + strand, within EX28DRAFT_0832 at 836.844 kb on + strand, within EX28DRAFT_0832 at 836.844 kb on + strand, within EX28DRAFT_0832 at 836.844 kb on + strand, within EX28DRAFT_0832 at 836.844 kb on + strand, within EX28DRAFT_0832 at 836.844 kb on + strand, within EX28DRAFT_0832 at 836.844 kb on + strand, within EX28DRAFT_0832 at 837.166 kb on + strand, within EX28DRAFT_0833 at 837.203 kb on + strand, within EX28DRAFT_0833 at 837.344 kb on + strand, within EX28DRAFT_0833 at 837.344 kb on + strand, within EX28DRAFT_0833 at 837.344 kb on + strand, within EX28DRAFT_0833 at 837.567 kb on + strand, within EX28DRAFT_0833
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 835,631 + -0.5 836,093 + EX28DRAFT_0831 0.51 +0.4 836,691 + EX28DRAFT_0832 0.49 -0.5 836,703 - EX28DRAFT_0832 0.52 -0.3 836,703 - EX28DRAFT_0832 0.52 -1.0 836,703 - EX28DRAFT_0832 0.52 +0.4 836,703 - EX28DRAFT_0832 0.52 -0.7 836,751 + EX28DRAFT_0832 0.64 -0.2 836,844 + EX28DRAFT_0832 0.88 -0.9 836,844 + EX28DRAFT_0832 0.88 -4.7 836,844 + EX28DRAFT_0832 0.88 +1.9 836,844 + EX28DRAFT_0832 0.88 -0.8 836,844 + EX28DRAFT_0832 0.88 +0.8 836,844 + EX28DRAFT_0832 0.88 +0.0 836,844 + EX28DRAFT_0832 0.88 -0.9 837,166 + EX28DRAFT_0833 0.33 -0.2 837,203 + EX28DRAFT_0833 0.38 +1.0 837,344 + EX28DRAFT_0833 0.55 +1.2 837,344 + EX28DRAFT_0833 0.55 +1.0 837,344 + EX28DRAFT_0833 0.55 +1.9 837,567 + EX28DRAFT_0833 0.83 +1.0
Or see this region's nucleotide sequence