Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0821 and EX28DRAFT_0822 are separated by 126 nucleotides EX28DRAFT_0822 and EX28DRAFT_0823 are separated by 274 nucleotides EX28DRAFT_0823 and EX28DRAFT_0824 are separated by 119 nucleotides
EX28DRAFT_0821: EX28DRAFT_0821 - GTP-binding protein YchF, at 825,217 to 826,311
_0821
EX28DRAFT_0822: EX28DRAFT_0822 - aminoacyl-tRNA hydrolase, at 826,438 to 827,022
_0822
EX28DRAFT_0823: EX28DRAFT_0823 - Protein of unknown function (DUF2583), at 827,297 to 827,572
_0823
EX28DRAFT_0824: EX28DRAFT_0824 - Predicted transcriptional regulators, at 827,692 to 828,750
_0824
Position (kb) 826
827
828 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 826.381 kb on - strand at 826.387 kb on - strand at 826.390 kb on - strand at 826.391 kb on + strand at 826.391 kb on + strand at 826.392 kb on - strand at 826.392 kb on - strand at 827.058 kb on - strand at 827.058 kb on - strand at 827.062 kb on + strand at 827.063 kb on - strand at 827.218 kb on + strand at 827.331 kb on + strand, within EX28DRAFT_0823 at 827.394 kb on + strand, within EX28DRAFT_0823 at 827.395 kb on - strand, within EX28DRAFT_0823 at 827.418 kb on - strand, within EX28DRAFT_0823 at 827.513 kb on + strand, within EX28DRAFT_0823 at 827.514 kb on - strand, within EX28DRAFT_0823 at 827.514 kb on - strand, within EX28DRAFT_0823 at 827.560 kb on + strand at 827.570 kb on + strand at 827.691 kb on + strand at 827.692 kb on - strand at 827.756 kb on - strand at 827.972 kb on + strand, within EX28DRAFT_0824 at 827.972 kb on + strand, within EX28DRAFT_0824 at 827.973 kb on - strand, within EX28DRAFT_0824 at 827.973 kb on - strand, within EX28DRAFT_0824 at 827.973 kb on - strand, within EX28DRAFT_0824 at 827.976 kb on + strand, within EX28DRAFT_0824 at 827.977 kb on - strand, within EX28DRAFT_0824
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 826,381 - +0.7 826,387 - +1.8 826,390 - -0.8 826,391 + -1.3 826,391 + -0.3 826,392 - +0.6 826,392 - +2.7 827,058 - -2.2 827,058 - +2.2 827,062 + -2.6 827,063 - -0.0 827,218 + +1.0 827,331 + EX28DRAFT_0823 0.12 +0.2 827,394 + EX28DRAFT_0823 0.35 -1.3 827,395 - EX28DRAFT_0823 0.36 -1.3 827,418 - EX28DRAFT_0823 0.44 -2.0 827,513 + EX28DRAFT_0823 0.78 +1.4 827,514 - EX28DRAFT_0823 0.79 +0.0 827,514 - EX28DRAFT_0823 0.79 -2.1 827,560 + +1.0 827,570 + +0.4 827,691 + -0.1 827,692 - -0.1 827,756 - +0.1 827,972 + EX28DRAFT_0824 0.26 -0.5 827,972 + EX28DRAFT_0824 0.26 -0.8 827,973 - EX28DRAFT_0824 0.27 -2.8 827,973 - EX28DRAFT_0824 0.27 +0.7 827,973 - EX28DRAFT_0824 0.27 -1.7 827,976 + EX28DRAFT_0824 0.27 +0.7 827,977 - EX28DRAFT_0824 0.27 -0.2
Or see this region's nucleotide sequence