Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0788 and EX28DRAFT_0789 are separated by 17 nucleotides EX28DRAFT_0789 and EX28DRAFT_0790 are separated by 2 nucleotides
EX28DRAFT_0788: EX28DRAFT_0788 - type VI secretion protein, VC_A0114 family, at 787,000 to 788,343
_0788
EX28DRAFT_0789: EX28DRAFT_0789 - type VI secretion system peptidoglycan-associated domain, at 788,361 to 789,599
_0789
EX28DRAFT_0790: EX28DRAFT_0790 - type VI secretion protein IcmF, at 789,602 to 793,222
_0790
Position (kb) 788
789
790 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 787.525 kb on - strand, within EX28DRAFT_0788 at 787.555 kb on + strand, within EX28DRAFT_0788 at 787.555 kb on + strand, within EX28DRAFT_0788 at 787.556 kb on - strand, within EX28DRAFT_0788 at 787.556 kb on - strand, within EX28DRAFT_0788 at 787.556 kb on - strand, within EX28DRAFT_0788 at 787.695 kb on + strand, within EX28DRAFT_0788 at 787.752 kb on - strand, within EX28DRAFT_0788 at 787.864 kb on + strand, within EX28DRAFT_0788 at 788.155 kb on - strand, within EX28DRAFT_0788 at 788.213 kb on - strand at 788.257 kb on - strand at 788.342 kb on - strand at 788.344 kb on + strand at 788.345 kb on - strand at 788.345 kb on - strand at 788.357 kb on + strand at 788.360 kb on + strand at 788.360 kb on + strand at 788.360 kb on + strand at 788.361 kb on - strand at 788.503 kb on + strand, within EX28DRAFT_0789 at 788.756 kb on + strand, within EX28DRAFT_0789 at 788.781 kb on + strand, within EX28DRAFT_0789 at 788.782 kb on - strand, within EX28DRAFT_0789 at 788.782 kb on - strand, within EX28DRAFT_0789 at 788.782 kb on - strand, within EX28DRAFT_0789 at 788.782 kb on - strand, within EX28DRAFT_0789 at 789.012 kb on + strand, within EX28DRAFT_0789 at 789.024 kb on - strand, within EX28DRAFT_0789 at 789.070 kb on - strand, within EX28DRAFT_0789 at 789.070 kb on - strand, within EX28DRAFT_0789 at 789.598 kb on - strand at 789.598 kb on - strand at 789.745 kb on + strand at 789.748 kb on + strand at 789.749 kb on - strand at 789.767 kb on + strand at 789.768 kb on - strand at 789.768 kb on - strand at 789.807 kb on - strand at 789.807 kb on - strand at 790.010 kb on + strand, within EX28DRAFT_0790 at 790.010 kb on + strand, within EX28DRAFT_0790 at 790.017 kb on - strand, within EX28DRAFT_0790 at 790.031 kb on + strand, within EX28DRAFT_0790 at 790.032 kb on - strand, within EX28DRAFT_0790 at 790.039 kb on + strand, within EX28DRAFT_0790 at 790.207 kb on + strand, within EX28DRAFT_0790 at 790.208 kb on - strand, within EX28DRAFT_0790 at 790.273 kb on + strand, within EX28DRAFT_0790 at 790.274 kb on - strand, within EX28DRAFT_0790 at 790.274 kb on - strand, within EX28DRAFT_0790 at 790.430 kb on + strand, within EX28DRAFT_0790 at 790.557 kb on - strand, within EX28DRAFT_0790
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 787,525 - EX28DRAFT_0788 0.39 -1.8 787,555 + EX28DRAFT_0788 0.41 +0.7 787,555 + EX28DRAFT_0788 0.41 -0.7 787,556 - EX28DRAFT_0788 0.41 +2.6 787,556 - EX28DRAFT_0788 0.41 +1.1 787,556 - EX28DRAFT_0788 0.41 +0.5 787,695 + EX28DRAFT_0788 0.52 +2.1 787,752 - EX28DRAFT_0788 0.56 -0.2 787,864 + EX28DRAFT_0788 0.64 +2.4 788,155 - EX28DRAFT_0788 0.86 -2.6 788,213 - -3.4 788,257 - +1.0 788,342 - +0.7 788,344 + +0.5 788,345 - -0.2 788,345 - -0.2 788,357 + +1.2 788,360 + -2.0 788,360 + -0.3 788,360 + +0.4 788,361 - +0.6 788,503 + EX28DRAFT_0789 0.11 +0.3 788,756 + EX28DRAFT_0789 0.32 +0.4 788,781 + EX28DRAFT_0789 0.34 +3.0 788,782 - EX28DRAFT_0789 0.34 -2.8 788,782 - EX28DRAFT_0789 0.34 -0.3 788,782 - EX28DRAFT_0789 0.34 -2.1 788,782 - EX28DRAFT_0789 0.34 +1.0 789,012 + EX28DRAFT_0789 0.53 -0.0 789,024 - EX28DRAFT_0789 0.54 -2.6 789,070 - EX28DRAFT_0789 0.57 +3.6 789,070 - EX28DRAFT_0789 0.57 -0.2 789,598 - +1.8 789,598 - +2.8 789,745 + +0.0 789,748 + +0.9 789,749 - +0.7 789,767 + -1.7 789,768 - -1.4 789,768 - -0.5 789,807 - -1.0 789,807 - +1.0 790,010 + EX28DRAFT_0790 0.11 +0.6 790,010 + EX28DRAFT_0790 0.11 -1.8 790,017 - EX28DRAFT_0790 0.11 +0.7 790,031 + EX28DRAFT_0790 0.12 +0.2 790,032 - EX28DRAFT_0790 0.12 +0.2 790,039 + EX28DRAFT_0790 0.12 +0.1 790,207 + EX28DRAFT_0790 0.17 +0.4 790,208 - EX28DRAFT_0790 0.17 +2.7 790,273 + EX28DRAFT_0790 0.19 -0.1 790,274 - EX28DRAFT_0790 0.19 -2.6 790,274 - EX28DRAFT_0790 0.19 -0.6 790,430 + EX28DRAFT_0790 0.23 -3.2 790,557 - EX28DRAFT_0790 0.26 -0.7
Or see this region's nucleotide sequence