Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0786 and EX28DRAFT_0787 are separated by 23 nucleotides EX28DRAFT_0787 and EX28DRAFT_0788 are separated by 28 nucleotides
EX28DRAFT_0786: EX28DRAFT_0786 - hypothetical protein, at 785,950 to 786,444
_0786
EX28DRAFT_0787: EX28DRAFT_0787 - type VI secretion lipoprotein, VC_A0113 family, at 786,468 to 786,971
_0787
EX28DRAFT_0788: EX28DRAFT_0788 - type VI secretion protein, VC_A0114 family, at 787,000 to 788,343
_0788
Position (kb) 786
787 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 785.507 kb on + strand at 785.508 kb on - strand at 785.509 kb on + strand at 785.509 kb on + strand at 785.510 kb on - strand at 785.510 kb on - strand at 785.693 kb on + strand at 785.716 kb on + strand at 785.717 kb on - strand at 785.727 kb on - strand at 785.740 kb on + strand at 785.764 kb on + strand at 785.764 kb on + strand at 785.765 kb on - strand at 785.765 kb on - strand at 785.765 kb on - strand at 785.789 kb on + strand at 785.813 kb on - strand at 785.834 kb on - strand at 785.837 kb on + strand at 785.837 kb on + strand at 785.838 kb on - strand at 785.838 kb on - strand at 785.838 kb on - strand at 785.838 kb on - strand at 785.838 kb on - strand at 785.882 kb on - strand at 785.888 kb on - strand at 785.888 kb on - strand at 785.894 kb on + strand at 785.894 kb on + strand at 785.895 kb on - strand at 785.895 kb on - strand at 785.895 kb on - strand at 785.915 kb on - strand at 785.949 kb on + strand at 785.949 kb on + strand at 785.985 kb on - strand at 786.036 kb on + strand, within EX28DRAFT_0786 at 786.036 kb on + strand, within EX28DRAFT_0786 at 786.139 kb on + strand, within EX28DRAFT_0786 at 786.140 kb on - strand, within EX28DRAFT_0786 at 786.211 kb on + strand, within EX28DRAFT_0786 at 786.211 kb on + strand, within EX28DRAFT_0786 at 786.284 kb on - strand, within EX28DRAFT_0786 at 786.337 kb on - strand, within EX28DRAFT_0786 at 786.345 kb on + strand, within EX28DRAFT_0786 at 786.346 kb on - strand, within EX28DRAFT_0786 at 786.442 kb on + strand at 786.442 kb on + strand at 786.507 kb on + strand at 786.620 kb on + strand, within EX28DRAFT_0787 at 786.621 kb on - strand, within EX28DRAFT_0787 at 786.675 kb on + strand, within EX28DRAFT_0787 at 786.676 kb on - strand, within EX28DRAFT_0787 at 786.676 kb on - strand, within EX28DRAFT_0787 at 786.799 kb on - strand, within EX28DRAFT_0787 at 786.884 kb on + strand, within EX28DRAFT_0787 at 786.884 kb on + strand, within EX28DRAFT_0787 at 786.884 kb on + strand, within EX28DRAFT_0787 at 786.885 kb on - strand, within EX28DRAFT_0787 at 786.885 kb on - strand, within EX28DRAFT_0787 at 786.888 kb on + strand, within EX28DRAFT_0787 at 786.889 kb on - strand, within EX28DRAFT_0787 at 787.075 kb on + strand at 787.076 kb on - strand at 787.110 kb on - strand at 787.120 kb on + strand at 787.121 kb on - strand at 787.121 kb on - strand at 787.121 kb on - strand at 787.121 kb on - strand at 787.189 kb on + strand, within EX28DRAFT_0788 at 787.189 kb on + strand, within EX28DRAFT_0788 at 787.190 kb on - strand, within EX28DRAFT_0788 at 787.190 kb on - strand, within EX28DRAFT_0788 at 787.525 kb on - strand, within EX28DRAFT_0788 at 787.555 kb on + strand, within EX28DRAFT_0788 at 787.555 kb on + strand, within EX28DRAFT_0788 at 787.556 kb on - strand, within EX28DRAFT_0788 at 787.556 kb on - strand, within EX28DRAFT_0788 at 787.556 kb on - strand, within EX28DRAFT_0788 at 787.695 kb on + strand, within EX28DRAFT_0788 at 787.752 kb on - strand, within EX28DRAFT_0788 at 787.864 kb on + strand, within EX28DRAFT_0788
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 785,507 + +1.6 785,508 - -0.2 785,509 + +1.3 785,509 + -0.3 785,510 - +0.3 785,510 - -0.2 785,693 + +0.0 785,716 + +1.1 785,717 - +0.1 785,727 - +0.3 785,740 + +0.3 785,764 + +0.8 785,764 + +0.8 785,765 - -0.8 785,765 - -0.7 785,765 - +0.0 785,789 + +0.4 785,813 - +0.1 785,834 - +0.1 785,837 + +0.5 785,837 + -2.5 785,838 - +0.6 785,838 - +2.2 785,838 - +0.6 785,838 - -1.5 785,838 - -0.7 785,882 - -0.2 785,888 - -0.5 785,888 - -0.2 785,894 + -0.5 785,894 + +0.4 785,895 - -1.2 785,895 - -0.8 785,895 - +2.2 785,915 - +1.5 785,949 + -0.1 785,949 + -1.6 785,985 - +1.1 786,036 + EX28DRAFT_0786 0.17 +2.3 786,036 + EX28DRAFT_0786 0.17 +0.2 786,139 + EX28DRAFT_0786 0.38 +0.5 786,140 - EX28DRAFT_0786 0.38 -0.0 786,211 + EX28DRAFT_0786 0.53 -0.6 786,211 + EX28DRAFT_0786 0.53 -0.5 786,284 - EX28DRAFT_0786 0.67 +0.3 786,337 - EX28DRAFT_0786 0.78 -1.0 786,345 + EX28DRAFT_0786 0.80 -2.9 786,346 - EX28DRAFT_0786 0.80 +0.3 786,442 + -1.2 786,442 + -0.6 786,507 + -1.1 786,620 + EX28DRAFT_0787 0.30 +0.6 786,621 - EX28DRAFT_0787 0.30 +0.4 786,675 + EX28DRAFT_0787 0.41 +1.3 786,676 - EX28DRAFT_0787 0.41 +1.5 786,676 - EX28DRAFT_0787 0.41 -0.5 786,799 - EX28DRAFT_0787 0.66 -1.1 786,884 + EX28DRAFT_0787 0.83 +0.8 786,884 + EX28DRAFT_0787 0.83 +0.4 786,884 + EX28DRAFT_0787 0.83 +0.4 786,885 - EX28DRAFT_0787 0.83 +0.4 786,885 - EX28DRAFT_0787 0.83 +1.5 786,888 + EX28DRAFT_0787 0.83 +1.2 786,889 - EX28DRAFT_0787 0.84 +2.3 787,075 + -0.2 787,076 - +1.2 787,110 - +1.1 787,120 + -1.0 787,121 - -0.6 787,121 - +0.6 787,121 - +0.0 787,121 - -1.6 787,189 + EX28DRAFT_0788 0.14 -2.7 787,189 + EX28DRAFT_0788 0.14 +1.2 787,190 - EX28DRAFT_0788 0.14 +0.5 787,190 - EX28DRAFT_0788 0.14 +0.9 787,525 - EX28DRAFT_0788 0.39 -1.8 787,555 + EX28DRAFT_0788 0.41 +0.7 787,555 + EX28DRAFT_0788 0.41 -0.7 787,556 - EX28DRAFT_0788 0.41 +2.6 787,556 - EX28DRAFT_0788 0.41 +1.1 787,556 - EX28DRAFT_0788 0.41 +0.5 787,695 + EX28DRAFT_0788 0.52 +2.1 787,752 - EX28DRAFT_0788 0.56 -0.2 787,864 + EX28DRAFT_0788 0.64 +2.4
Or see this region's nucleotide sequence