Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0761 and EX28DRAFT_0762 are separated by 123 nucleotides EX28DRAFT_0762 and EX28DRAFT_0763 are separated by 143 nucleotides EX28DRAFT_0763 and EX28DRAFT_0764 are separated by 200 nucleotides EX28DRAFT_0764 and EX28DRAFT_0765 are separated by 69 nucleotides
EX28DRAFT_0761: EX28DRAFT_0761 - Uncharacterized conserved protein, at 756,972 to 757,412
_0761
EX28DRAFT_0762: EX28DRAFT_0762 - Disulfide bond formation protein DsbB, at 757,536 to 758,066
_0762
EX28DRAFT_0763: EX28DRAFT_0763 - Na+/H+ antiporter NhaB, at 758,210 to 759,748
_0763
EX28DRAFT_0764: EX28DRAFT_0764 - fatty acid metabolism transcriptional regulator FadR, at 759,949 to 760,668
_0764
EX28DRAFT_0765: EX28DRAFT_0765 - Uncharacterized conserved protein, at 760,738 to 762,270
_0765
Position (kb) 758
759
760 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 757.238 kb on + strand, within EX28DRAFT_0761 at 757.238 kb on + strand, within EX28DRAFT_0761 at 757.248 kb on + strand, within EX28DRAFT_0761 at 757.331 kb on + strand, within EX28DRAFT_0761 at 757.331 kb on + strand, within EX28DRAFT_0761 at 757.537 kb on + strand at 757.935 kb on - strand, within EX28DRAFT_0762 at 758.067 kb on - strand at 758.089 kb on + strand at 758.089 kb on + strand at 758.090 kb on - strand at 758.144 kb on - strand at 758.150 kb on + strand at 758.207 kb on - strand at 758.207 kb on - strand at 758.207 kb on - strand at 758.207 kb on - strand at 758.207 kb on - strand at 758.207 kb on - strand at 758.207 kb on - strand at 758.207 kb on - strand at 758.207 kb on - strand at 758.225 kb on + strand at 758.225 kb on + strand at 758.225 kb on + strand at 758.227 kb on + strand at 758.228 kb on - strand at 758.238 kb on - strand at 758.266 kb on + strand at 758.308 kb on + strand at 758.308 kb on + strand at 758.310 kb on + strand at 758.351 kb on + strand at 758.352 kb on - strand at 758.352 kb on - strand at 758.352 kb on - strand at 758.609 kb on + strand, within EX28DRAFT_0763 at 758.612 kb on + strand, within EX28DRAFT_0763 at 758.612 kb on + strand, within EX28DRAFT_0763 at 758.613 kb on - strand, within EX28DRAFT_0763 at 758.613 kb on - strand, within EX28DRAFT_0763 at 758.623 kb on + strand, within EX28DRAFT_0763 at 758.862 kb on - strand, within EX28DRAFT_0763 at 759.255 kb on + strand, within EX28DRAFT_0763 at 759.260 kb on - strand, within EX28DRAFT_0763 at 759.260 kb on - strand, within EX28DRAFT_0763 at 759.264 kb on + strand, within EX28DRAFT_0763 at 759.429 kb on + strand, within EX28DRAFT_0763 at 759.429 kb on + strand, within EX28DRAFT_0763 at 759.429 kb on + strand, within EX28DRAFT_0763 at 759.678 kb on - strand at 759.686 kb on - strand at 759.771 kb on + strand at 759.787 kb on + strand at 759.787 kb on + strand at 759.787 kb on + strand at 759.831 kb on - strand at 759.881 kb on + strand at 759.905 kb on - strand at 759.923 kb on + strand at 759.958 kb on - strand at 759.991 kb on + strand at 760.384 kb on + strand, within EX28DRAFT_0764 at 760.462 kb on + strand, within EX28DRAFT_0764 at 760.525 kb on + strand, within EX28DRAFT_0764 at 760.525 kb on + strand, within EX28DRAFT_0764 at 760.526 kb on - strand, within EX28DRAFT_0764 at 760.530 kb on + strand, within EX28DRAFT_0764 at 760.740 kb on - strand at 760.747 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 757,238 + EX28DRAFT_0761 0.60 +1.1 757,238 + EX28DRAFT_0761 0.60 -0.7 757,248 + EX28DRAFT_0761 0.63 -0.4 757,331 + EX28DRAFT_0761 0.81 +1.5 757,331 + EX28DRAFT_0761 0.81 -0.5 757,537 + -0.5 757,935 - EX28DRAFT_0762 0.75 -0.8 758,067 - -1.5 758,089 + -0.1 758,089 + -2.5 758,090 - +1.4 758,144 - -0.3 758,150 + -2.5 758,207 - +0.2 758,207 - +2.0 758,207 - +0.4 758,207 - -0.1 758,207 - +0.1 758,207 - +1.0 758,207 - +2.0 758,207 - +0.1 758,207 - -1.5 758,225 + -0.1 758,225 + -1.2 758,225 + -0.3 758,227 + -0.6 758,228 - +0.6 758,238 - -0.3 758,266 + -3.6 758,308 + -0.2 758,308 + +1.1 758,310 + +0.8 758,351 + +1.5 758,352 - -0.2 758,352 - +0.9 758,352 - +0.8 758,609 + EX28DRAFT_0763 0.26 +2.8 758,612 + EX28DRAFT_0763 0.26 -0.3 758,612 + EX28DRAFT_0763 0.26 -0.5 758,613 - EX28DRAFT_0763 0.26 -1.1 758,613 - EX28DRAFT_0763 0.26 +0.5 758,623 + EX28DRAFT_0763 0.27 +0.6 758,862 - EX28DRAFT_0763 0.42 +0.6 759,255 + EX28DRAFT_0763 0.68 -0.6 759,260 - EX28DRAFT_0763 0.68 +0.3 759,260 - EX28DRAFT_0763 0.68 -0.8 759,264 + EX28DRAFT_0763 0.68 -2.0 759,429 + EX28DRAFT_0763 0.79 -0.1 759,429 + EX28DRAFT_0763 0.79 -2.9 759,429 + EX28DRAFT_0763 0.79 -1.4 759,678 - +0.1 759,686 - +1.0 759,771 + -1.0 759,787 + +0.1 759,787 + -2.3 759,787 + -1.2 759,831 - -2.7 759,881 + +0.1 759,905 - -0.4 759,923 + -0.3 759,958 - -1.0 759,991 + -2.7 760,384 + EX28DRAFT_0764 0.60 -1.9 760,462 + EX28DRAFT_0764 0.71 +0.7 760,525 + EX28DRAFT_0764 0.80 -0.2 760,525 + EX28DRAFT_0764 0.80 -2.7 760,526 - EX28DRAFT_0764 0.80 -0.8 760,530 + EX28DRAFT_0764 0.81 -1.5 760,740 - +0.5 760,747 - -0.2
Or see this region's nucleotide sequence