Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0740 and EX28DRAFT_0741 are separated by 12 nucleotides EX28DRAFT_0741 and EX28DRAFT_0742 are separated by 46 nucleotides EX28DRAFT_0742 and EX28DRAFT_0743 are separated by 463 nucleotides
EX28DRAFT_0740: EX28DRAFT_0740 - PTS system, mannose/fructose/sorbose family, IID component, at 736,869 to 737,720
_0740
EX28DRAFT_0741: EX28DRAFT_0741 - PTS system, mannose/fructose/sorbose family, IIC component, at 737,733 to 738,533
_0741
EX28DRAFT_0742: EX28DRAFT_0742 - PTS system, mannose/fructose/sorbose family, IIB component, at 738,580 to 739,545
_0742
EX28DRAFT_0743: EX28DRAFT_0743 - Membrane protein TerC, possibly involved in tellurium resistance, at 740,009 to 741,568
_0743
Position (kb) 738
739
740 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 737.612 kb on + strand, within EX28DRAFT_0740 at 737.646 kb on - strand at 737.646 kb on - strand at 737.712 kb on - strand at 737.801 kb on - strand at 737.821 kb on + strand, within EX28DRAFT_0741 at 737.902 kb on + strand, within EX28DRAFT_0741 at 737.903 kb on - strand, within EX28DRAFT_0741 at 737.964 kb on + strand, within EX28DRAFT_0741 at 737.964 kb on + strand, within EX28DRAFT_0741 at 737.964 kb on + strand, within EX28DRAFT_0741 at 737.965 kb on - strand, within EX28DRAFT_0741 at 738.045 kb on - strand, within EX28DRAFT_0741 at 738.111 kb on + strand, within EX28DRAFT_0741 at 738.112 kb on - strand, within EX28DRAFT_0741 at 738.112 kb on - strand, within EX28DRAFT_0741 at 738.186 kb on - strand, within EX28DRAFT_0741 at 738.192 kb on - strand, within EX28DRAFT_0741 at 738.425 kb on + strand, within EX28DRAFT_0741 at 738.485 kb on + strand at 738.486 kb on - strand at 738.524 kb on + strand at 738.546 kb on - strand at 738.548 kb on + strand at 738.548 kb on + strand at 738.549 kb on - strand at 738.549 kb on - strand at 738.549 kb on - strand at 738.559 kb on + strand at 738.559 kb on + strand at 738.559 kb on + strand at 738.560 kb on - strand at 738.560 kb on - strand at 738.562 kb on - strand at 738.581 kb on + strand at 738.750 kb on + strand, within EX28DRAFT_0742 at 738.863 kb on + strand, within EX28DRAFT_0742 at 739.034 kb on - strand, within EX28DRAFT_0742 at 739.047 kb on + strand, within EX28DRAFT_0742 at 739.071 kb on - strand, within EX28DRAFT_0742 at 739.071 kb on - strand, within EX28DRAFT_0742 at 739.286 kb on + strand, within EX28DRAFT_0742 at 739.286 kb on + strand, within EX28DRAFT_0742 at 739.344 kb on + strand, within EX28DRAFT_0742 at 739.344 kb on + strand, within EX28DRAFT_0742 at 739.345 kb on - strand, within EX28DRAFT_0742 at 739.345 kb on - strand, within EX28DRAFT_0742 at 739.345 kb on - strand, within EX28DRAFT_0742 at 739.345 kb on - strand, within EX28DRAFT_0742 at 739.533 kb on + strand at 739.551 kb on - strand at 739.551 kb on - strand at 739.551 kb on - strand at 739.561 kb on - strand at 739.572 kb on + strand at 739.673 kb on - strand at 739.733 kb on + strand at 739.758 kb on + strand at 739.829 kb on - strand at 739.832 kb on - strand at 739.832 kb on - strand at 739.842 kb on + strand at 739.843 kb on - strand at 739.844 kb on + strand at 739.845 kb on - strand at 739.860 kb on + strand at 739.862 kb on + strand at 739.863 kb on - strand at 739.910 kb on - strand at 739.933 kb on + strand at 740.249 kb on + strand, within EX28DRAFT_0743 at 740.249 kb on + strand, within EX28DRAFT_0743 at 740.250 kb on - strand, within EX28DRAFT_0743 at 740.271 kb on + strand, within EX28DRAFT_0743 at 740.271 kb on + strand, within EX28DRAFT_0743 at 740.322 kb on + strand, within EX28DRAFT_0743 at 740.322 kb on + strand, within EX28DRAFT_0743 at 740.322 kb on + strand, within EX28DRAFT_0743
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 737,612 + EX28DRAFT_0740 0.87 -0.2 737,646 - +0.7 737,646 - -1.3 737,712 - +2.5 737,801 - -0.5 737,821 + EX28DRAFT_0741 0.11 -0.4 737,902 + EX28DRAFT_0741 0.21 +1.9 737,903 - EX28DRAFT_0741 0.21 +0.4 737,964 + EX28DRAFT_0741 0.29 -0.4 737,964 + EX28DRAFT_0741 0.29 +2.4 737,964 + EX28DRAFT_0741 0.29 -0.9 737,965 - EX28DRAFT_0741 0.29 -0.1 738,045 - EX28DRAFT_0741 0.39 +1.2 738,111 + EX28DRAFT_0741 0.47 +1.8 738,112 - EX28DRAFT_0741 0.47 +0.2 738,112 - EX28DRAFT_0741 0.47 -1.1 738,186 - EX28DRAFT_0741 0.57 -0.2 738,192 - EX28DRAFT_0741 0.57 -0.7 738,425 + EX28DRAFT_0741 0.86 +1.8 738,485 + +2.2 738,486 - +1.0 738,524 + -1.2 738,546 - +1.6 738,548 + +0.7 738,548 + -1.7 738,549 - -0.2 738,549 - +1.6 738,549 - -0.6 738,559 + -2.6 738,559 + -0.4 738,559 + +0.1 738,560 - -0.3 738,560 - +3.1 738,562 - -1.2 738,581 + -0.1 738,750 + EX28DRAFT_0742 0.18 +0.4 738,863 + EX28DRAFT_0742 0.29 +1.5 739,034 - EX28DRAFT_0742 0.47 -0.8 739,047 + EX28DRAFT_0742 0.48 +0.6 739,071 - EX28DRAFT_0742 0.51 -0.4 739,071 - EX28DRAFT_0742 0.51 +1.9 739,286 + EX28DRAFT_0742 0.73 -0.1 739,286 + EX28DRAFT_0742 0.73 -0.4 739,344 + EX28DRAFT_0742 0.79 +1.8 739,344 + EX28DRAFT_0742 0.79 +0.8 739,345 - EX28DRAFT_0742 0.79 -1.2 739,345 - EX28DRAFT_0742 0.79 -0.8 739,345 - EX28DRAFT_0742 0.79 +3.9 739,345 - EX28DRAFT_0742 0.79 +0.1 739,533 + -1.3 739,551 - -0.4 739,551 - -0.0 739,551 - +0.5 739,561 - +0.8 739,572 + +0.3 739,673 - -2.4 739,733 + +1.3 739,758 + +0.4 739,829 - +1.2 739,832 - +0.4 739,832 - +2.4 739,842 + +0.1 739,843 - -0.1 739,844 + -3.6 739,845 - -4.0 739,860 + +0.2 739,862 + -0.3 739,863 - -1.0 739,910 - +0.0 739,933 + -3.2 740,249 + EX28DRAFT_0743 0.15 +0.5 740,249 + EX28DRAFT_0743 0.15 -3.6 740,250 - EX28DRAFT_0743 0.15 -1.8 740,271 + EX28DRAFT_0743 0.17 -1.7 740,271 + EX28DRAFT_0743 0.17 -0.1 740,322 + EX28DRAFT_0743 0.20 +0.5 740,322 + EX28DRAFT_0743 0.20 +1.5 740,322 + EX28DRAFT_0743 0.20 +1.0
Or see this region's nucleotide sequence