Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0733 and EX28DRAFT_0734 are separated by 506 nucleotides EX28DRAFT_0734 and EX28DRAFT_0735 overlap by 286 nucleotides EX28DRAFT_0735 and EX28DRAFT_0736 are separated by 219 nucleotides
EX28DRAFT_0733: EX28DRAFT_0733 - Predicted Zn-dependent hydrolases of the beta-lactamase fold, at 730,693 to 731,682
_0733
EX28DRAFT_0734: EX28DRAFT_0734 - RNA, at 732,189 to 732,651
_0734
EX28DRAFT_0735: EX28DRAFT_0735 - Cold shock proteins, at 732,366 to 732,575
_0735
EX28DRAFT_0736: EX28DRAFT_0736 - Cell division protein FtsI/penicillin-binding protein 2, at 732,795 to 734,513
_0736
Position (kb) 732
733 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 731.238 kb on + strand, within EX28DRAFT_0733 at 731.238 kb on + strand, within EX28DRAFT_0733 at 731.267 kb on + strand, within EX28DRAFT_0733 at 731.381 kb on - strand, within EX28DRAFT_0733 at 731.422 kb on - strand, within EX28DRAFT_0733 at 731.444 kb on + strand, within EX28DRAFT_0733 at 731.453 kb on - strand, within EX28DRAFT_0733 at 731.484 kb on + strand, within EX28DRAFT_0733 at 731.668 kb on + strand at 731.697 kb on + strand at 731.704 kb on + strand at 731.706 kb on + strand at 731.706 kb on + strand at 731.992 kb on - strand at 732.078 kb on + strand at 732.079 kb on - strand at 732.161 kb on + strand at 732.161 kb on + strand at 732.208 kb on - strand at 732.280 kb on + strand, within EX28DRAFT_0734 at 732.282 kb on + strand, within EX28DRAFT_0734 at 732.282 kb on + strand, within EX28DRAFT_0734 at 732.282 kb on + strand, within EX28DRAFT_0734 at 732.282 kb on + strand, within EX28DRAFT_0734 at 732.282 kb on + strand, within EX28DRAFT_0734 at 732.286 kb on - strand, within EX28DRAFT_0734 at 732.300 kb on + strand, within EX28DRAFT_0734 at 732.377 kb on + strand at 732.389 kb on + strand at 732.457 kb on + strand at 732.569 kb on + strand at 732.602 kb on - strand at 732.621 kb on + strand at 732.659 kb on - strand at 732.670 kb on + strand at 732.692 kb on - strand at 732.695 kb on - strand at 732.860 kb on - strand at 732.864 kb on - strand at 732.947 kb on + strand at 732.948 kb on - strand at 732.994 kb on + strand, within EX28DRAFT_0736 at 732.995 kb on - strand, within EX28DRAFT_0736 at 733.058 kb on + strand, within EX28DRAFT_0736 at 733.186 kb on - strand, within EX28DRAFT_0736 at 733.463 kb on + strand, within EX28DRAFT_0736 at 733.464 kb on - strand, within EX28DRAFT_0736 at 733.464 kb on - strand, within EX28DRAFT_0736 at 733.474 kb on + strand, within EX28DRAFT_0736 at 733.474 kb on + strand, within EX28DRAFT_0736 at 733.474 kb on + strand, within EX28DRAFT_0736 at 733.475 kb on - strand, within EX28DRAFT_0736 at 733.475 kb on - strand, within EX28DRAFT_0736 at 733.569 kb on - strand, within EX28DRAFT_0736 at 733.588 kb on + strand, within EX28DRAFT_0736 at 733.588 kb on + strand, within EX28DRAFT_0736
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 731,238 + EX28DRAFT_0733 0.55 +0.3 731,238 + EX28DRAFT_0733 0.55 -0.1 731,267 + EX28DRAFT_0733 0.58 -0.5 731,381 - EX28DRAFT_0733 0.69 +1.2 731,422 - EX28DRAFT_0733 0.74 +0.5 731,444 + EX28DRAFT_0733 0.76 -0.2 731,453 - EX28DRAFT_0733 0.77 +0.5 731,484 + EX28DRAFT_0733 0.80 -0.2 731,668 + -2.2 731,697 + -0.5 731,704 + -1.5 731,706 + +0.5 731,706 + -2.4 731,992 - -3.1 732,078 + +1.0 732,079 - -1.5 732,161 + +2.0 732,161 + +0.2 732,208 - +1.9 732,280 + EX28DRAFT_0734 0.20 +1.7 732,282 + EX28DRAFT_0734 0.20 -0.3 732,282 + EX28DRAFT_0734 0.20 +1.6 732,282 + EX28DRAFT_0734 0.20 +1.6 732,282 + EX28DRAFT_0734 0.20 -0.8 732,282 + EX28DRAFT_0734 0.20 +2.7 732,286 - EX28DRAFT_0734 0.21 +0.1 732,300 + EX28DRAFT_0734 0.24 +7.5 732,377 + +2.0 732,389 + -0.7 732,457 + +2.9 732,569 + +1.0 732,602 - +0.2 732,621 + +1.8 732,659 - -0.4 732,670 + -0.8 732,692 - +0.4 732,695 - +0.5 732,860 - -0.3 732,864 - -0.8 732,947 + -1.2 732,948 - +0.4 732,994 + EX28DRAFT_0736 0.12 -0.2 732,995 - EX28DRAFT_0736 0.12 +0.6 733,058 + EX28DRAFT_0736 0.15 +0.5 733,186 - EX28DRAFT_0736 0.23 +0.3 733,463 + EX28DRAFT_0736 0.39 +0.5 733,464 - EX28DRAFT_0736 0.39 +1.0 733,464 - EX28DRAFT_0736 0.39 +0.0 733,474 + EX28DRAFT_0736 0.39 -0.7 733,474 + EX28DRAFT_0736 0.39 -1.8 733,474 + EX28DRAFT_0736 0.39 +0.4 733,475 - EX28DRAFT_0736 0.40 -0.5 733,475 - EX28DRAFT_0736 0.40 -0.3 733,569 - EX28DRAFT_0736 0.45 +0.2 733,588 + EX28DRAFT_0736 0.46 +0.7 733,588 + EX28DRAFT_0736 0.46 -0.3
Or see this region's nucleotide sequence