Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0686 and EX28DRAFT_0687 overlap by 4 nucleotides EX28DRAFT_0687 and EX28DRAFT_0688 are separated by 40 nucleotides EX28DRAFT_0688 and EX28DRAFT_0689 are separated by 51 nucleotides EX28DRAFT_0689 and EX28DRAFT_0690 overlap by 4 nucleotides
EX28DRAFT_0686: EX28DRAFT_0686 - tRNA (mo5U34)-methyltransferase, at 684,897 to 685,868
_0686
EX28DRAFT_0687: EX28DRAFT_0687 - tRNA (cmo5U34)-methyltransferase, at 685,865 to 686,608
_0687
EX28DRAFT_0688: EX28DRAFT_0688 - Uncharacterized relative of glutathione S-transferase, MAPEG superfamily, at 686,649 to 687,044
_0688
EX28DRAFT_0689: EX28DRAFT_0689 - Uncharacterized conserved protein, at 687,096 to 687,914
_0689
EX28DRAFT_0690: EX28DRAFT_0690 - Amidases related to nicotinamidase, at 687,911 to 688,477
_0690
Position (kb) 686
687
688 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 686.041 kb on - strand, within EX28DRAFT_0687 at 686.482 kb on + strand, within EX28DRAFT_0687 at 686.482 kb on + strand, within EX28DRAFT_0687 at 686.483 kb on - strand, within EX28DRAFT_0687 at 686.640 kb on + strand at 686.641 kb on - strand at 686.681 kb on + strand at 686.681 kb on + strand at 686.682 kb on - strand at 686.683 kb on + strand at 686.683 kb on + strand at 686.683 kb on + strand at 686.683 kb on + strand at 686.684 kb on - strand at 686.684 kb on - strand at 686.684 kb on - strand at 686.684 kb on - strand at 686.780 kb on - strand, within EX28DRAFT_0688 at 686.780 kb on - strand, within EX28DRAFT_0688 at 686.801 kb on + strand, within EX28DRAFT_0688 at 686.855 kb on + strand, within EX28DRAFT_0688 at 686.872 kb on - strand, within EX28DRAFT_0688 at 687.019 kb on - strand at 687.044 kb on + strand at 687.044 kb on + strand at 687.045 kb on - strand at 687.080 kb on - strand at 687.227 kb on - strand, within EX28DRAFT_0689 at 687.799 kb on + strand, within EX28DRAFT_0689 at 687.799 kb on + strand, within EX28DRAFT_0689 at 687.800 kb on - strand, within EX28DRAFT_0689 at 687.801 kb on + strand, within EX28DRAFT_0689 at 687.801 kb on + strand, within EX28DRAFT_0689 at 687.801 kb on + strand, within EX28DRAFT_0689 at 687.802 kb on - strand, within EX28DRAFT_0689 at 687.802 kb on - strand, within EX28DRAFT_0689 at 687.802 kb on - strand, within EX28DRAFT_0689 at 687.842 kb on - strand at 687.842 kb on - strand at 687.907 kb on + strand at 687.908 kb on - strand at 687.908 kb on - strand at 687.967 kb on + strand at 687.967 kb on + strand at 688.037 kb on - strand, within EX28DRAFT_0690 at 688.037 kb on - strand, within EX28DRAFT_0690
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 686,041 - EX28DRAFT_0687 0.24 -0.2 686,482 + EX28DRAFT_0687 0.83 +0.8 686,482 + EX28DRAFT_0687 0.83 +1.8 686,483 - EX28DRAFT_0687 0.83 -0.3 686,640 + +2.8 686,641 - -1.2 686,681 + -1.0 686,681 + +1.8 686,682 - -1.5 686,683 + +0.9 686,683 + -2.4 686,683 + +0.4 686,683 + +0.7 686,684 - -1.6 686,684 - +2.0 686,684 - +1.7 686,684 - -1.2 686,780 - EX28DRAFT_0688 0.33 -3.4 686,780 - EX28DRAFT_0688 0.33 -0.1 686,801 + EX28DRAFT_0688 0.38 -1.4 686,855 + EX28DRAFT_0688 0.52 -0.6 686,872 - EX28DRAFT_0688 0.56 -1.2 687,019 - +1.3 687,044 + +0.1 687,044 + +3.0 687,045 - +2.3 687,080 - -0.0 687,227 - EX28DRAFT_0689 0.16 +0.5 687,799 + EX28DRAFT_0689 0.86 +0.0 687,799 + EX28DRAFT_0689 0.86 +0.4 687,800 - EX28DRAFT_0689 0.86 -0.6 687,801 + EX28DRAFT_0689 0.86 -0.2 687,801 + EX28DRAFT_0689 0.86 -2.2 687,801 + EX28DRAFT_0689 0.86 -0.0 687,802 - EX28DRAFT_0689 0.86 -1.5 687,802 - EX28DRAFT_0689 0.86 -1.3 687,802 - EX28DRAFT_0689 0.86 -0.4 687,842 - +1.4 687,842 - +2.5 687,907 + +0.5 687,908 - -0.7 687,908 - +0.5 687,967 + -2.1 687,967 + -0.5 688,037 - EX28DRAFT_0690 0.22 +2.6 688,037 - EX28DRAFT_0690 0.22 +1.0
Or see this region's nucleotide sequence