Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0562

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0560 and EX28DRAFT_0561 are separated by 496 nucleotidesEX28DRAFT_0561 and EX28DRAFT_0562 are separated by 47 nucleotidesEX28DRAFT_0562 and EX28DRAFT_0563 are separated by 61 nucleotides EX28DRAFT_0560: EX28DRAFT_0560 - RND family efflux transporter, MFP subunit, at 556,000 to 556,986 _0560 EX28DRAFT_0561: EX28DRAFT_0561 - Universal stress protein UspA and related nucleotide-binding proteins, at 557,483 to 557,914 _0561 EX28DRAFT_0562: EX28DRAFT_0562 - ATPase, P-type (transporting), HAD superfamily, subfamily IC, at 557,962 to 560,655 _0562 EX28DRAFT_0563: EX28DRAFT_0563 - Uncharacterized protein conserved in bacteria, at 560,717 to 561,613 _0563 Position (kb) 557 558 559 560 561Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 556.991 kb on - strandat 557.089 kb on - strandat 557.145 kb on + strandat 557.145 kb on + strandat 557.170 kb on + strandat 557.171 kb on - strandat 557.172 kb on + strandat 557.173 kb on - strandat 557.173 kb on - strandat 557.177 kb on - strandat 557.225 kb on - strandat 557.243 kb on + strandat 557.251 kb on - strandat 557.254 kb on + strandat 557.254 kb on + strandat 557.254 kb on + strandat 557.254 kb on + strandat 557.254 kb on + strandat 557.254 kb on + strandat 557.255 kb on - strandat 557.255 kb on - strandat 557.255 kb on - strandat 557.255 kb on - strandat 557.289 kb on - strandat 557.289 kb on - strandat 557.296 kb on + strandat 557.375 kb on + strandat 557.482 kb on + strandat 557.483 kb on - strandat 557.516 kb on + strandat 557.666 kb on + strand, within EX28DRAFT_0561at 557.777 kb on - strand, within EX28DRAFT_0561at 557.989 kb on + strandat 558.147 kb on + strandat 558.148 kb on - strandat 558.156 kb on - strandat 558.163 kb on + strandat 558.164 kb on - strandat 558.212 kb on + strandat 558.310 kb on - strand, within EX28DRAFT_0562at 558.387 kb on + strand, within EX28DRAFT_0562at 558.387 kb on + strand, within EX28DRAFT_0562at 558.387 kb on + strand, within EX28DRAFT_0562at 558.414 kb on + strand, within EX28DRAFT_0562at 558.545 kb on - strand, within EX28DRAFT_0562at 558.546 kb on + strand, within EX28DRAFT_0562at 558.547 kb on - strand, within EX28DRAFT_0562at 558.568 kb on - strand, within EX28DRAFT_0562at 558.693 kb on + strand, within EX28DRAFT_0562at 558.772 kb on - strand, within EX28DRAFT_0562at 558.801 kb on + strand, within EX28DRAFT_0562at 558.801 kb on + strand, within EX28DRAFT_0562at 559.043 kb on - strand, within EX28DRAFT_0562at 559.043 kb on - strand, within EX28DRAFT_0562at 559.060 kb on - strand, within EX28DRAFT_0562at 559.060 kb on - strand, within EX28DRAFT_0562at 559.070 kb on + strand, within EX28DRAFT_0562at 559.120 kb on + strand, within EX28DRAFT_0562at 559.144 kb on - strand, within EX28DRAFT_0562at 559.158 kb on - strand, within EX28DRAFT_0562at 559.215 kb on + strand, within EX28DRAFT_0562at 559.215 kb on + strand, within EX28DRAFT_0562at 559.215 kb on + strand, within EX28DRAFT_0562at 559.291 kb on + strand, within EX28DRAFT_0562at 559.292 kb on - strand, within EX28DRAFT_0562at 559.293 kb on + strand, within EX28DRAFT_0562at 559.293 kb on + strand, within EX28DRAFT_0562at 559.293 kb on + strand, within EX28DRAFT_0562at 559.293 kb on + strand, within EX28DRAFT_0562at 559.293 kb on + strand, within EX28DRAFT_0562at 559.293 kb on + strand, within EX28DRAFT_0562at 559.294 kb on - strand, within EX28DRAFT_0562at 559.294 kb on - strand, within EX28DRAFT_0562at 559.297 kb on + strand, within EX28DRAFT_0562at 559.297 kb on + strand, within EX28DRAFT_0562at 559.297 kb on + strand, within EX28DRAFT_0562at 559.297 kb on + strand, within EX28DRAFT_0562at 559.297 kb on + strand, within EX28DRAFT_0562at 559.297 kb on + strand, within EX28DRAFT_0562at 559.297 kb on + strand, within EX28DRAFT_0562at 559.298 kb on - strand, within EX28DRAFT_0562at 559.298 kb on - strand, within EX28DRAFT_0562at 559.298 kb on - strand, within EX28DRAFT_0562at 559.448 kb on - strand, within EX28DRAFT_0562at 559.771 kb on + strand, within EX28DRAFT_0562at 559.776 kb on + strand, within EX28DRAFT_0562at 559.833 kb on + strand, within EX28DRAFT_0562at 560.240 kb on + strand, within EX28DRAFT_0562at 560.240 kb on + strand, within EX28DRAFT_0562at 560.240 kb on + strand, within EX28DRAFT_0562at 560.395 kb on + strandat 560.396 kb on - strandat 560.396 kb on - strandat 560.480 kb on + strandat 560.481 kb on - strandat 560.510 kb on - strandat 560.602 kb on - strandat 560.653 kb on + strandat 560.654 kb on - strandat 560.657 kb on - strandat 560.662 kb on - strandat 560.716 kb on + strandat 560.717 kb on - strandat 560.729 kb on - strandat 560.783 kb on + strandat 560.785 kb on + strandat 560.786 kb on - strandat 560.903 kb on - strand, within EX28DRAFT_0563at 560.964 kb on + strand, within EX28DRAFT_0563at 561.035 kb on + strand, within EX28DRAFT_0563at 561.038 kb on + strand, within EX28DRAFT_0563at 561.038 kb on + strand, within EX28DRAFT_0563at 561.039 kb on - strand, within EX28DRAFT_0563at 561.137 kb on - strand, within EX28DRAFT_0563at 561.251 kb on + strand, within EX28DRAFT_0563at 561.261 kb on - strand, within EX28DRAFT_0563at 561.261 kb on - strand, within EX28DRAFT_0563at 561.275 kb on + strand, within EX28DRAFT_0563at 561.275 kb on + strand, within EX28DRAFT_0563at 561.275 kb on + strand, within EX28DRAFT_0563at 561.276 kb on - strand, within EX28DRAFT_0563at 561.292 kb on + strand, within EX28DRAFT_0563at 561.362 kb on + strand, within EX28DRAFT_0563at 561.506 kb on - strand, within EX28DRAFT_0563at 561.506 kb on - strand, within EX28DRAFT_0563at 561.629 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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556,991 - -1.4
557,089 - -3.1
557,145 + +0.5
557,145 + +0.6
557,170 + +0.8
557,171 - -1.8
557,172 + -0.5
557,173 - +0.7
557,173 - -1.6
557,177 - +0.5
557,225 - -1.3
557,243 + -1.4
557,251 - +0.2
557,254 + -0.8
557,254 + -1.2
557,254 + +1.0
557,254 + -1.9
557,254 + +0.1
557,254 + -0.1
557,255 - -0.3
557,255 - +2.2
557,255 - -3.5
557,255 - -0.1
557,289 - -2.2
557,289 - -2.0
557,296 + -3.6
557,375 + -0.5
557,482 + +0.1
557,483 - -0.8
557,516 + -2.3
557,666 + EX28DRAFT_0561 0.42 -1.3
557,777 - EX28DRAFT_0561 0.68 -0.5
557,989 + -0.0
558,147 + -0.2
558,148 - -1.2
558,156 - -1.0
558,163 + +0.3
558,164 - -1.5
558,212 + +0.5
558,310 - EX28DRAFT_0562 0.13 +0.4
558,387 + EX28DRAFT_0562 0.16 -1.6
558,387 + EX28DRAFT_0562 0.16 -1.0
558,387 + EX28DRAFT_0562 0.16 +0.2
558,414 + EX28DRAFT_0562 0.17 +0.1
558,545 - EX28DRAFT_0562 0.22 +0.1
558,546 + EX28DRAFT_0562 0.22 +0.8
558,547 - EX28DRAFT_0562 0.22 -0.1
558,568 - EX28DRAFT_0562 0.22 -0.9
558,693 + EX28DRAFT_0562 0.27 +0.9
558,772 - EX28DRAFT_0562 0.30 -0.1
558,801 + EX28DRAFT_0562 0.31 +1.1
558,801 + EX28DRAFT_0562 0.31 +0.2
559,043 - EX28DRAFT_0562 0.40 +3.0
559,043 - EX28DRAFT_0562 0.40 -1.2
559,060 - EX28DRAFT_0562 0.41 +0.3
559,060 - EX28DRAFT_0562 0.41 -3.0
559,070 + EX28DRAFT_0562 0.41 -1.2
559,120 + EX28DRAFT_0562 0.43 +0.4
559,144 - EX28DRAFT_0562 0.44 +1.7
559,158 - EX28DRAFT_0562 0.44 +1.7
559,215 + EX28DRAFT_0562 0.47 +0.3
559,215 + EX28DRAFT_0562 0.47 -0.7
559,215 + EX28DRAFT_0562 0.47 +0.6
559,291 + EX28DRAFT_0562 0.49 +0.7
559,292 - EX28DRAFT_0562 0.49 +0.4
559,293 + EX28DRAFT_0562 0.49 -0.2
559,293 + EX28DRAFT_0562 0.49 -3.2
559,293 + EX28DRAFT_0562 0.49 +2.9
559,293 + EX28DRAFT_0562 0.49 +0.3
559,293 + EX28DRAFT_0562 0.49 +0.5
559,293 + EX28DRAFT_0562 0.49 +1.0
559,294 - EX28DRAFT_0562 0.49 -1.2
559,294 - EX28DRAFT_0562 0.49 +0.1
559,297 + EX28DRAFT_0562 0.50 -2.3
559,297 + EX28DRAFT_0562 0.50 -1.4
559,297 + EX28DRAFT_0562 0.50 -2.3
559,297 + EX28DRAFT_0562 0.50 -0.6
559,297 + EX28DRAFT_0562 0.50 +0.7
559,297 + EX28DRAFT_0562 0.50 +0.7
559,297 + EX28DRAFT_0562 0.50 +0.8
559,298 - EX28DRAFT_0562 0.50 +0.6
559,298 - EX28DRAFT_0562 0.50 +0.9
559,298 - EX28DRAFT_0562 0.50 +1.8
559,448 - EX28DRAFT_0562 0.55 -3.5
559,771 + EX28DRAFT_0562 0.67 +1.1
559,776 + EX28DRAFT_0562 0.67 -0.7
559,833 + EX28DRAFT_0562 0.69 -1.0
560,240 + EX28DRAFT_0562 0.85 +0.3
560,240 + EX28DRAFT_0562 0.85 +1.8
560,240 + EX28DRAFT_0562 0.85 -2.2
560,395 + -1.3
560,396 - +0.7
560,396 - -0.7
560,480 + -0.7
560,481 - +0.1
560,510 - -0.5
560,602 - +1.0
560,653 + -0.3
560,654 - +1.0
560,657 - -3.7
560,662 - -3.1
560,716 + +1.4
560,717 - +1.7
560,729 - +0.3
560,783 + +0.3
560,785 + +1.3
560,786 - +0.6
560,903 - EX28DRAFT_0563 0.21 +1.1
560,964 + EX28DRAFT_0563 0.28 -3.6
561,035 + EX28DRAFT_0563 0.35 -0.1
561,038 + EX28DRAFT_0563 0.36 +0.4
561,038 + EX28DRAFT_0563 0.36 +1.9
561,039 - EX28DRAFT_0563 0.36 -0.9
561,137 - EX28DRAFT_0563 0.47 -1.2
561,251 + EX28DRAFT_0563 0.60 -1.7
561,261 - EX28DRAFT_0563 0.61 +0.2
561,261 - EX28DRAFT_0563 0.61 +0.6
561,275 + EX28DRAFT_0563 0.62 +1.6
561,275 + EX28DRAFT_0563 0.62 +0.4
561,275 + EX28DRAFT_0563 0.62 +0.2
561,276 - EX28DRAFT_0563 0.62 +1.6
561,292 + EX28DRAFT_0563 0.64 -1.2
561,362 + EX28DRAFT_0563 0.72 +0.5
561,506 - EX28DRAFT_0563 0.88 +2.1
561,506 - EX28DRAFT_0563 0.88 +0.5
561,629 - -0.6

Or see this region's nucleotide sequence