Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0556 and EX28DRAFT_0557 are separated by 256 nucleotides EX28DRAFT_0557 and EX28DRAFT_0558 overlap by 4 nucleotides EX28DRAFT_0558 and EX28DRAFT_0559 overlap by 4 nucleotides
EX28DRAFT_0556: EX28DRAFT_0556 - metabolite-proton symporter, at 549,831 to 551,147
_0556
EX28DRAFT_0557: EX28DRAFT_0557 - Antimicrobial peptide resistance and lipid A acylation protein PagP, at 551,404 to 551,979
_0557
EX28DRAFT_0558: EX28DRAFT_0558 - Uncharacterized protein conserved in bacteria, at 551,976 to 552,941
_0558
EX28DRAFT_0559: EX28DRAFT_0559 - Cation/multidrug efflux pump, at 552,938 to 556,000
_0559
Position (kb) 551
552
553 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 551.042 kb on - strand at 551.172 kb on + strand at 551.172 kb on + strand at 551.172 kb on + strand at 551.177 kb on - strand at 551.177 kb on - strand at 551.185 kb on - strand at 551.268 kb on - strand at 551.318 kb on - strand at 551.320 kb on + strand at 551.321 kb on - strand at 551.367 kb on + strand at 551.367 kb on + strand at 551.367 kb on + strand at 551.367 kb on + strand at 551.368 kb on - strand at 551.368 kb on - strand at 551.566 kb on + strand, within EX28DRAFT_0557 at 551.598 kb on + strand, within EX28DRAFT_0557 at 551.598 kb on + strand, within EX28DRAFT_0557 at 551.603 kb on - strand, within EX28DRAFT_0557 at 551.627 kb on - strand, within EX28DRAFT_0557 at 551.848 kb on + strand, within EX28DRAFT_0557 at 551.849 kb on - strand, within EX28DRAFT_0557 at 551.849 kb on - strand, within EX28DRAFT_0557 at 551.849 kb on - strand, within EX28DRAFT_0557 at 551.892 kb on + strand, within EX28DRAFT_0557 at 551.892 kb on + strand, within EX28DRAFT_0557 at 551.893 kb on - strand, within EX28DRAFT_0557 at 551.893 kb on - strand, within EX28DRAFT_0557 at 551.917 kb on + strand, within EX28DRAFT_0557 at 551.917 kb on + strand, within EX28DRAFT_0557 at 551.918 kb on - strand, within EX28DRAFT_0557 at 551.932 kb on + strand at 551.932 kb on + strand at 551.933 kb on - strand at 551.933 kb on - strand at 551.933 kb on - strand at 551.969 kb on + strand at 552.041 kb on + strand at 552.136 kb on + strand, within EX28DRAFT_0558 at 552.137 kb on - strand, within EX28DRAFT_0558 at 552.237 kb on - strand, within EX28DRAFT_0558 at 552.247 kb on + strand, within EX28DRAFT_0558 at 552.247 kb on + strand, within EX28DRAFT_0558 at 552.248 kb on - strand, within EX28DRAFT_0558 at 552.248 kb on - strand, within EX28DRAFT_0558 at 552.341 kb on + strand, within EX28DRAFT_0558 at 552.434 kb on - strand, within EX28DRAFT_0558 at 552.497 kb on - strand, within EX28DRAFT_0558 at 552.607 kb on + strand, within EX28DRAFT_0558 at 552.646 kb on - strand, within EX28DRAFT_0558 at 552.649 kb on + strand, within EX28DRAFT_0558 at 552.679 kb on + strand, within EX28DRAFT_0558 at 552.680 kb on - strand, within EX28DRAFT_0558 at 552.680 kb on - strand, within EX28DRAFT_0558 at 552.680 kb on - strand, within EX28DRAFT_0558 at 552.680 kb on - strand, within EX28DRAFT_0558 at 552.854 kb on - strand at 552.854 kb on - strand at 552.854 kb on - strand at 552.871 kb on + strand at 552.879 kb on - strand at 552.899 kb on + strand at 552.900 kb on - strand at 552.900 kb on - strand at 552.961 kb on + strand at 552.962 kb on - strand at 552.962 kb on - strand at 552.978 kb on + strand at 552.978 kb on + strand at 552.978 kb on + strand at 552.978 kb on + strand at 552.978 kb on + strand at 552.978 kb on + strand at 552.979 kb on - strand at 552.979 kb on - strand at 552.979 kb on - strand at 552.982 kb on + strand at 553.012 kb on + strand at 553.012 kb on + strand at 553.099 kb on + strand at 553.259 kb on - strand, within EX28DRAFT_0559 at 553.259 kb on - strand, within EX28DRAFT_0559 at 553.376 kb on - strand, within EX28DRAFT_0559 at 553.416 kb on - strand, within EX28DRAFT_0559 at 553.656 kb on + strand, within EX28DRAFT_0559 at 553.656 kb on + strand, within EX28DRAFT_0559 at 553.656 kb on + strand, within EX28DRAFT_0559 at 553.657 kb on - strand, within EX28DRAFT_0559 at 553.657 kb on - strand, within EX28DRAFT_0559 at 553.657 kb on - strand, within EX28DRAFT_0559 at 553.825 kb on + strand, within EX28DRAFT_0559 at 553.860 kb on + strand, within EX28DRAFT_0559
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 551,042 - -0.2 551,172 + +0.9 551,172 + -1.7 551,172 + +1.2 551,177 - +1.8 551,177 - +0.9 551,185 - -0.0 551,268 - +0.4 551,318 - -0.1 551,320 + +0.6 551,321 - +0.2 551,367 + +0.3 551,367 + -0.1 551,367 + -2.3 551,367 + -0.2 551,368 - -1.0 551,368 - +2.1 551,566 + EX28DRAFT_0557 0.28 +0.3 551,598 + EX28DRAFT_0557 0.34 -1.5 551,598 + EX28DRAFT_0557 0.34 +2.7 551,603 - EX28DRAFT_0557 0.35 -3.1 551,627 - EX28DRAFT_0557 0.39 -0.8 551,848 + EX28DRAFT_0557 0.77 +1.5 551,849 - EX28DRAFT_0557 0.77 -1.1 551,849 - EX28DRAFT_0557 0.77 +1.0 551,849 - EX28DRAFT_0557 0.77 +1.2 551,892 + EX28DRAFT_0557 0.85 +0.3 551,892 + EX28DRAFT_0557 0.85 -0.7 551,893 - EX28DRAFT_0557 0.85 +1.3 551,893 - EX28DRAFT_0557 0.85 -1.8 551,917 + EX28DRAFT_0557 0.89 +0.3 551,917 + EX28DRAFT_0557 0.89 +0.5 551,918 - EX28DRAFT_0557 0.89 -1.6 551,932 + +0.4 551,932 + +0.5 551,933 - -1.0 551,933 - -2.1 551,933 - +0.2 551,969 + -0.3 552,041 + -2.1 552,136 + EX28DRAFT_0558 0.17 -1.6 552,137 - EX28DRAFT_0558 0.17 +0.1 552,237 - EX28DRAFT_0558 0.27 -0.1 552,247 + EX28DRAFT_0558 0.28 +0.6 552,247 + EX28DRAFT_0558 0.28 -1.6 552,248 - EX28DRAFT_0558 0.28 +0.3 552,248 - EX28DRAFT_0558 0.28 -1.1 552,341 + EX28DRAFT_0558 0.38 -3.4 552,434 - EX28DRAFT_0558 0.47 +0.3 552,497 - EX28DRAFT_0558 0.54 -0.5 552,607 + EX28DRAFT_0558 0.65 -0.5 552,646 - EX28DRAFT_0558 0.69 -0.8 552,649 + EX28DRAFT_0558 0.70 +0.2 552,679 + EX28DRAFT_0558 0.73 -1.2 552,680 - EX28DRAFT_0558 0.73 +0.3 552,680 - EX28DRAFT_0558 0.73 +0.9 552,680 - EX28DRAFT_0558 0.73 +0.2 552,680 - EX28DRAFT_0558 0.73 +0.0 552,854 - -3.4 552,854 - -1.7 552,854 - -1.5 552,871 + -2.5 552,879 - -0.9 552,899 + -0.8 552,900 - +1.3 552,900 - +1.4 552,961 + +0.3 552,962 - -0.4 552,962 - +1.2 552,978 + +0.4 552,978 + +1.1 552,978 + +0.2 552,978 + -0.2 552,978 + +0.2 552,978 + -0.7 552,979 - -0.6 552,979 - +1.1 552,979 - -0.8 552,982 + +1.1 553,012 + +0.6 553,012 + -0.2 553,099 + -0.0 553,259 - EX28DRAFT_0559 0.10 +1.3 553,259 - EX28DRAFT_0559 0.10 +0.6 553,376 - EX28DRAFT_0559 0.14 +0.3 553,416 - EX28DRAFT_0559 0.16 +0.5 553,656 + EX28DRAFT_0559 0.23 -1.7 553,656 + EX28DRAFT_0559 0.23 -0.0 553,656 + EX28DRAFT_0559 0.23 -1.2 553,657 - EX28DRAFT_0559 0.23 +1.8 553,657 - EX28DRAFT_0559 0.23 -0.4 553,657 - EX28DRAFT_0559 0.23 +0.8 553,825 + EX28DRAFT_0559 0.29 +0.3 553,860 + EX28DRAFT_0559 0.30 +1.5
Or see this region's nucleotide sequence