Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0410

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0409 and EX28DRAFT_0410 are separated by 49 nucleotidesEX28DRAFT_0410 and EX28DRAFT_0411 are separated by 124 nucleotidesEX28DRAFT_0411 and EX28DRAFT_0412 are separated by 126 nucleotides EX28DRAFT_0409: EX28DRAFT_0409 - ABC-type glucose/galactose transport system, permease component, at 386,991 to 388,001 _0409 EX28DRAFT_0410: EX28DRAFT_0410 - Glutamine synthetase, at 388,051 to 389,439 _0410 EX28DRAFT_0411: EX28DRAFT_0411 - Uncharacterized membrane protein, at 389,564 to 390,280 _0411 EX28DRAFT_0412: EX28DRAFT_0412 - cytidine deaminase (EC 3.5.4.5), at 390,407 to 391,291 _0412 Position (kb) 388 389 390Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 387.059 kb on - strandat 387.061 kb on + strandat 387.093 kb on - strand, within EX28DRAFT_0409at 387.100 kb on + strand, within EX28DRAFT_0409at 387.146 kb on + strand, within EX28DRAFT_0409at 387.147 kb on - strand, within EX28DRAFT_0409at 387.362 kb on + strand, within EX28DRAFT_0409at 387.365 kb on + strand, within EX28DRAFT_0409at 387.375 kb on + strand, within EX28DRAFT_0409at 387.411 kb on - strand, within EX28DRAFT_0409at 387.444 kb on + strand, within EX28DRAFT_0409at 387.445 kb on - strand, within EX28DRAFT_0409at 387.543 kb on + strand, within EX28DRAFT_0409at 387.543 kb on + strand, within EX28DRAFT_0409at 387.543 kb on + strand, within EX28DRAFT_0409at 387.544 kb on - strand, within EX28DRAFT_0409at 387.544 kb on - strand, within EX28DRAFT_0409at 387.544 kb on - strand, within EX28DRAFT_0409at 387.545 kb on + strand, within EX28DRAFT_0409at 387.545 kb on + strand, within EX28DRAFT_0409at 387.555 kb on + strand, within EX28DRAFT_0409at 387.714 kb on + strand, within EX28DRAFT_0409at 387.780 kb on + strand, within EX28DRAFT_0409at 387.781 kb on - strand, within EX28DRAFT_0409at 387.930 kb on + strandat 387.936 kb on - strandat 387.985 kb on - strandat 387.999 kb on + strandat 387.999 kb on + strandat 388.000 kb on - strandat 388.045 kb on + strandat 388.046 kb on - strandat 388.052 kb on + strandat 388.164 kb on - strandat 388.399 kb on - strand, within EX28DRAFT_0410at 388.400 kb on + strand, within EX28DRAFT_0410at 388.414 kb on - strand, within EX28DRAFT_0410at 388.537 kb on - strand, within EX28DRAFT_0410at 388.747 kb on + strand, within EX28DRAFT_0410at 388.755 kb on - strand, within EX28DRAFT_0410at 388.855 kb on - strand, within EX28DRAFT_0410at 388.858 kb on - strand, within EX28DRAFT_0410at 388.858 kb on - strand, within EX28DRAFT_0410at 388.985 kb on - strand, within EX28DRAFT_0410at 389.013 kb on + strand, within EX28DRAFT_0410at 389.266 kb on + strand, within EX28DRAFT_0410at 389.266 kb on + strand, within EX28DRAFT_0410at 389.266 kb on + strand, within EX28DRAFT_0410at 389.267 kb on - strand, within EX28DRAFT_0410at 389.386 kb on + strandat 389.440 kb on + strandat 389.441 kb on - strandat 389.494 kb on - strandat 389.549 kb on - strandat 389.550 kb on + strandat 389.551 kb on - strandat 389.566 kb on - strandat 389.585 kb on - strandat 389.672 kb on + strand, within EX28DRAFT_0411at 389.700 kb on + strand, within EX28DRAFT_0411at 389.700 kb on + strand, within EX28DRAFT_0411at 389.701 kb on - strand, within EX28DRAFT_0411at 389.759 kb on - strand, within EX28DRAFT_0411at 389.781 kb on + strand, within EX28DRAFT_0411at 389.804 kb on - strand, within EX28DRAFT_0411at 390.030 kb on + strand, within EX28DRAFT_0411at 390.030 kb on + strand, within EX28DRAFT_0411at 390.030 kb on + strand, within EX28DRAFT_0411at 390.051 kb on + strand, within EX28DRAFT_0411at 390.052 kb on - strand, within EX28DRAFT_0411at 390.088 kb on - strand, within EX28DRAFT_0411at 390.114 kb on + strand, within EX28DRAFT_0411at 390.115 kb on - strand, within EX28DRAFT_0411at 390.180 kb on + strand, within EX28DRAFT_0411at 390.181 kb on - strand, within EX28DRAFT_0411at 390.237 kb on - strandat 390.237 kb on - strandat 390.318 kb on + strandat 390.419 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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387,059 - +2.9
387,061 + -0.7
387,093 - EX28DRAFT_0409 0.10 -1.1
387,100 + EX28DRAFT_0409 0.11 +1.3
387,146 + EX28DRAFT_0409 0.15 -0.2
387,147 - EX28DRAFT_0409 0.15 -0.3
387,362 + EX28DRAFT_0409 0.37 -1.0
387,365 + EX28DRAFT_0409 0.37 +1.1
387,375 + EX28DRAFT_0409 0.38 -2.5
387,411 - EX28DRAFT_0409 0.42 -2.2
387,444 + EX28DRAFT_0409 0.45 -1.2
387,445 - EX28DRAFT_0409 0.45 -2.5
387,543 + EX28DRAFT_0409 0.55 +1.5
387,543 + EX28DRAFT_0409 0.55 +2.3
387,543 + EX28DRAFT_0409 0.55 -1.0
387,544 - EX28DRAFT_0409 0.55 -2.9
387,544 - EX28DRAFT_0409 0.55 -0.2
387,544 - EX28DRAFT_0409 0.55 -2.8
387,545 + EX28DRAFT_0409 0.55 +1.2
387,545 + EX28DRAFT_0409 0.55 +0.4
387,555 + EX28DRAFT_0409 0.56 -0.4
387,714 + EX28DRAFT_0409 0.72 +1.6
387,780 + EX28DRAFT_0409 0.78 -0.2
387,781 - EX28DRAFT_0409 0.78 -1.5
387,930 + -0.9
387,936 - -0.4
387,985 - -0.4
387,999 + -0.0
387,999 + -0.4
388,000 - -0.3
388,045 + -1.8
388,046 - +0.8
388,052 + +0.1
388,164 - -0.1
388,399 - EX28DRAFT_0410 0.25 -3.5
388,400 + EX28DRAFT_0410 0.25 +0.4
388,414 - EX28DRAFT_0410 0.26 -1.2
388,537 - EX28DRAFT_0410 0.35 -1.6
388,747 + EX28DRAFT_0410 0.50 -0.1
388,755 - EX28DRAFT_0410 0.51 -0.2
388,855 - EX28DRAFT_0410 0.58 +0.5
388,858 - EX28DRAFT_0410 0.58 -0.0
388,858 - EX28DRAFT_0410 0.58 -0.3
388,985 - EX28DRAFT_0410 0.67 +0.5
389,013 + EX28DRAFT_0410 0.69 -1.5
389,266 + EX28DRAFT_0410 0.87 +0.1
389,266 + EX28DRAFT_0410 0.87 +0.3
389,266 + EX28DRAFT_0410 0.87 -0.6
389,267 - EX28DRAFT_0410 0.88 +0.2
389,386 + +0.3
389,440 + +1.6
389,441 - +0.8
389,494 - +2.0
389,549 - -1.7
389,550 + -2.5
389,551 - -0.4
389,566 - -0.2
389,585 - -2.5
389,672 + EX28DRAFT_0411 0.15 -0.5
389,700 + EX28DRAFT_0411 0.19 +0.9
389,700 + EX28DRAFT_0411 0.19 -1.0
389,701 - EX28DRAFT_0411 0.19 -3.0
389,759 - EX28DRAFT_0411 0.27 -3.4
389,781 + EX28DRAFT_0411 0.30 -4.0
389,804 - EX28DRAFT_0411 0.33 -0.6
390,030 + EX28DRAFT_0411 0.65 -3.1
390,030 + EX28DRAFT_0411 0.65 -0.8
390,030 + EX28DRAFT_0411 0.65 -0.8
390,051 + EX28DRAFT_0411 0.68 +1.8
390,052 - EX28DRAFT_0411 0.68 -2.0
390,088 - EX28DRAFT_0411 0.73 +0.7
390,114 + EX28DRAFT_0411 0.77 +0.4
390,115 - EX28DRAFT_0411 0.77 -1.6
390,180 + EX28DRAFT_0411 0.86 -1.0
390,181 - EX28DRAFT_0411 0.86 -0.7
390,237 - -0.4
390,237 - -1.5
390,318 + -2.1
390,419 + -0.6

Or see this region's nucleotide sequence