Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0342 and EX28DRAFT_0343 overlap by 1 nucleotides EX28DRAFT_0343 and EX28DRAFT_0344 overlap by 4 nucleotides EX28DRAFT_0344 and EX28DRAFT_0345 are separated by 124 nucleotides EX28DRAFT_0345 and EX28DRAFT_0346 are separated by 93 nucleotides
EX28DRAFT_0342: EX28DRAFT_0342 - 1,4-Dihydroxy-2-naphthoyl-CoA synthase (EC 4.1.3.36), at 304,440 to 305,297
_0342
EX28DRAFT_0343: EX28DRAFT_0343 - O-succinylbenzoate synthase (EC 4.2.1.113), at 305,297 to 306,262
_0343
EX28DRAFT_0344: EX28DRAFT_0344 - O-succinylbenzoate-CoA ligase, at 306,259 to 307,620
_0344
EX28DRAFT_0345: EX28DRAFT_0345 - YfaZ precursor, at 307,745 to 308,284
_0345
EX28DRAFT_0346: EX28DRAFT_0346 - molybdenum cofactor synthesis domain/competence/damage-inducible protein CinA N-terminal domain, at 308,378 to 309,577
_0346
Position (kb) 306
307
308 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2
3
4
5 at 305.280 kb on + strand at 305.280 kb on + strand at 305.281 kb on - strand at 305.281 kb on - strand at 305.281 kb on - strand at 305.296 kb on - strand at 305.557 kb on + strand, within EX28DRAFT_0343 at 305.606 kb on - strand, within EX28DRAFT_0343 at 305.828 kb on + strand, within EX28DRAFT_0343 at 305.923 kb on - strand, within EX28DRAFT_0343 at 305.923 kb on - strand, within EX28DRAFT_0343 at 306.439 kb on - strand, within EX28DRAFT_0344 at 306.715 kb on - strand, within EX28DRAFT_0344 at 306.715 kb on - strand, within EX28DRAFT_0344 at 306.715 kb on - strand, within EX28DRAFT_0344 at 306.831 kb on - strand, within EX28DRAFT_0344 at 306.906 kb on + strand, within EX28DRAFT_0344 at 306.948 kb on + strand, within EX28DRAFT_0344 at 307.118 kb on + strand, within EX28DRAFT_0344 at 307.119 kb on - strand, within EX28DRAFT_0344 at 307.151 kb on + strand, within EX28DRAFT_0344 at 307.152 kb on - strand, within EX28DRAFT_0344 at 307.152 kb on - strand, within EX28DRAFT_0344 at 307.185 kb on + strand, within EX28DRAFT_0344 at 307.217 kb on + strand, within EX28DRAFT_0344 at 307.217 kb on + strand, within EX28DRAFT_0344 at 307.218 kb on - strand, within EX28DRAFT_0344 at 307.566 kb on + strand at 307.566 kb on + strand at 307.567 kb on - strand at 307.619 kb on - strand at 307.621 kb on + strand at 307.635 kb on - strand at 307.638 kb on + strand at 307.646 kb on - strand at 307.719 kb on + strand at 307.719 kb on + strand at 307.720 kb on - strand at 307.722 kb on - strand at 307.724 kb on + strand at 307.725 kb on - strand at 307.725 kb on - strand at 307.785 kb on + strand at 307.836 kb on - strand, within EX28DRAFT_0345 at 307.837 kb on + strand, within EX28DRAFT_0345 at 307.838 kb on - strand, within EX28DRAFT_0345 at 307.990 kb on + strand, within EX28DRAFT_0345 at 307.990 kb on + strand, within EX28DRAFT_0345 at 307.994 kb on + strand, within EX28DRAFT_0345 at 307.994 kb on + strand, within EX28DRAFT_0345 at 307.994 kb on + strand, within EX28DRAFT_0345 at 307.994 kb on + strand, within EX28DRAFT_0345 at 307.994 kb on + strand, within EX28DRAFT_0345 at 307.994 kb on + strand, within EX28DRAFT_0345 at 307.994 kb on + strand, within EX28DRAFT_0345 at 307.994 kb on + strand, within EX28DRAFT_0345 at 307.995 kb on - strand, within EX28DRAFT_0345 at 307.995 kb on - strand, within EX28DRAFT_0345 at 307.995 kb on - strand, within EX28DRAFT_0345 at 307.996 kb on + strand, within EX28DRAFT_0345 at 307.996 kb on + strand, within EX28DRAFT_0345 at 307.996 kb on + strand, within EX28DRAFT_0345 at 308.090 kb on + strand, within EX28DRAFT_0345 at 308.090 kb on + strand, within EX28DRAFT_0345 at 308.090 kb on + strand, within EX28DRAFT_0345 at 308.091 kb on - strand, within EX28DRAFT_0345 at 308.091 kb on - strand, within EX28DRAFT_0345 at 308.093 kb on + strand, within EX28DRAFT_0345 at 308.093 kb on + strand, within EX28DRAFT_0345 at 308.094 kb on - strand, within EX28DRAFT_0345 at 308.094 kb on - strand, within EX28DRAFT_0345 at 308.283 kb on - strand at 308.283 kb on - strand at 308.345 kb on - strand at 308.345 kb on - strand at 308.346 kb on + strand at 308.347 kb on - strand at 308.363 kb on - strand at 308.376 kb on + strand at 308.377 kb on - strand at 308.383 kb on + strand at 308.432 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 305,280 + +0.5 305,280 + +0.2 305,281 - -0.8 305,281 - +0.1 305,281 - +0.7 305,296 - +0.6 305,557 + EX28DRAFT_0343 0.27 -0.9 305,606 - EX28DRAFT_0343 0.32 +0.1 305,828 + EX28DRAFT_0343 0.55 +0.8 305,923 - EX28DRAFT_0343 0.65 -1.7 305,923 - EX28DRAFT_0343 0.65 -0.4 306,439 - EX28DRAFT_0344 0.13 -0.1 306,715 - EX28DRAFT_0344 0.33 -0.1 306,715 - EX28DRAFT_0344 0.33 +1.2 306,715 - EX28DRAFT_0344 0.33 -0.3 306,831 - EX28DRAFT_0344 0.42 -0.0 306,906 + EX28DRAFT_0344 0.48 -0.1 306,948 + EX28DRAFT_0344 0.51 -0.4 307,118 + EX28DRAFT_0344 0.63 -0.6 307,119 - EX28DRAFT_0344 0.63 -1.1 307,151 + EX28DRAFT_0344 0.65 -0.8 307,152 - EX28DRAFT_0344 0.66 +0.6 307,152 - EX28DRAFT_0344 0.66 +0.3 307,185 + EX28DRAFT_0344 0.68 -1.0 307,217 + EX28DRAFT_0344 0.70 +0.5 307,217 + EX28DRAFT_0344 0.70 -0.5 307,218 - EX28DRAFT_0344 0.70 -0.0 307,566 + +0.2 307,566 + +0.9 307,567 - -3.0 307,619 - +0.5 307,621 + +1.4 307,635 - -1.5 307,638 + +1.4 307,646 - +0.5 307,719 + -1.7 307,719 + -0.1 307,720 - -0.5 307,722 - -0.4 307,724 + +2.5 307,725 - -3.3 307,725 - -2.9 307,785 + -2.9 307,836 - EX28DRAFT_0345 0.17 +0.6 307,837 + EX28DRAFT_0345 0.17 +3.3 307,838 - EX28DRAFT_0345 0.17 +2.4 307,990 + EX28DRAFT_0345 0.45 -1.5 307,990 + EX28DRAFT_0345 0.45 +0.8 307,994 + EX28DRAFT_0345 0.46 +2.7 307,994 + EX28DRAFT_0345 0.46 +0.2 307,994 + EX28DRAFT_0345 0.46 +0.9 307,994 + EX28DRAFT_0345 0.46 -0.5 307,994 + EX28DRAFT_0345 0.46 +0.8 307,994 + EX28DRAFT_0345 0.46 +0.1 307,994 + EX28DRAFT_0345 0.46 -0.8 307,994 + EX28DRAFT_0345 0.46 -0.4 307,995 - EX28DRAFT_0345 0.46 +0.3 307,995 - EX28DRAFT_0345 0.46 -6.9 307,995 - EX28DRAFT_0345 0.46 -0.2 307,996 + EX28DRAFT_0345 0.46 +0.9 307,996 + EX28DRAFT_0345 0.46 -1.9 307,996 + EX28DRAFT_0345 0.46 +0.9 308,090 + EX28DRAFT_0345 0.64 +1.1 308,090 + EX28DRAFT_0345 0.64 +1.1 308,090 + EX28DRAFT_0345 0.64 +0.0 308,091 - EX28DRAFT_0345 0.64 +0.8 308,091 - EX28DRAFT_0345 0.64 -1.0 308,093 + EX28DRAFT_0345 0.64 +1.7 308,093 + EX28DRAFT_0345 0.64 +0.9 308,094 - EX28DRAFT_0345 0.65 -1.3 308,094 - EX28DRAFT_0345 0.65 +0.6 308,283 - -0.5 308,283 - -2.7 308,345 - +0.1 308,345 - +1.3 308,346 + -1.0 308,347 - -1.5 308,363 - +1.5 308,376 + +0.2 308,377 - +0.7 308,383 + -0.1 308,432 - +4.9
Or see this region's nucleotide sequence