Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0146 and EX28DRAFT_0147 are separated by 292 nucleotides EX28DRAFT_0147 and EX28DRAFT_0148 are separated by 11 nucleotides
EX28DRAFT_0146: EX28DRAFT_0146 - transcriptional regulator, RpiR family, at 89,976 to 90,809
_0146
EX28DRAFT_0147: EX28DRAFT_0147 - methylmalonic acid semialdehyde dehydrogenase, at 91,102 to 92,607
_0147
EX28DRAFT_0148: EX28DRAFT_0148 - Acetolactate synthase, at 92,619 to 94,544
_0148
Position (kb) 91
92
93 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 90.320 kb on - strand, within EX28DRAFT_0146 at 90.329 kb on - strand, within EX28DRAFT_0146 at 90.341 kb on + strand, within EX28DRAFT_0146 at 90.367 kb on + strand, within EX28DRAFT_0146 at 90.367 kb on + strand, within EX28DRAFT_0146 at 90.367 kb on + strand, within EX28DRAFT_0146 at 90.368 kb on - strand, within EX28DRAFT_0146 at 90.547 kb on + strand, within EX28DRAFT_0146 at 90.832 kb on - strand at 91.054 kb on + strand at 91.080 kb on + strand at 91.080 kb on + strand at 91.215 kb on + strand at 91.215 kb on + strand at 91.802 kb on - strand, within EX28DRAFT_0147 at 91.977 kb on + strand, within EX28DRAFT_0147 at 92.113 kb on + strand, within EX28DRAFT_0147 at 92.195 kb on - strand, within EX28DRAFT_0147 at 92.195 kb on - strand, within EX28DRAFT_0147 at 92.245 kb on + strand, within EX28DRAFT_0147 at 92.245 kb on + strand, within EX28DRAFT_0147 at 92.246 kb on - strand, within EX28DRAFT_0147 at 92.246 kb on - strand, within EX28DRAFT_0147 at 92.332 kb on + strand, within EX28DRAFT_0147 at 92.332 kb on + strand, within EX28DRAFT_0147 at 92.332 kb on + strand, within EX28DRAFT_0147 at 92.333 kb on - strand, within EX28DRAFT_0147 at 92.618 kb on + strand at 92.633 kb on + strand at 92.634 kb on - strand at 92.676 kb on + strand at 92.677 kb on - strand at 92.828 kb on + strand, within EX28DRAFT_0148 at 92.910 kb on - strand, within EX28DRAFT_0148 at 92.976 kb on + strand, within EX28DRAFT_0148 at 92.977 kb on - strand, within EX28DRAFT_0148 at 93.022 kb on - strand, within EX28DRAFT_0148 at 93.022 kb on - strand, within EX28DRAFT_0148 at 93.137 kb on + strand, within EX28DRAFT_0148 at 93.138 kb on - strand, within EX28DRAFT_0148 at 93.430 kb on + strand, within EX28DRAFT_0148 at 93.430 kb on + strand, within EX28DRAFT_0148 at 93.447 kb on - strand, within EX28DRAFT_0148 at 93.545 kb on + strand, within EX28DRAFT_0148 at 93.546 kb on - strand, within EX28DRAFT_0148
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 90,320 - EX28DRAFT_0146 0.41 +1.3 90,329 - EX28DRAFT_0146 0.42 +2.9 90,341 + EX28DRAFT_0146 0.44 -0.1 90,367 + EX28DRAFT_0146 0.47 -1.9 90,367 + EX28DRAFT_0146 0.47 +0.9 90,367 + EX28DRAFT_0146 0.47 +1.1 90,368 - EX28DRAFT_0146 0.47 +0.5 90,547 + EX28DRAFT_0146 0.68 +1.4 90,832 - +0.5 91,054 + -1.2 91,080 + -1.9 91,080 + -0.9 91,215 + -0.3 91,215 + +0.3 91,802 - EX28DRAFT_0147 0.46 -0.1 91,977 + EX28DRAFT_0147 0.58 -0.5 92,113 + EX28DRAFT_0147 0.67 -1.2 92,195 - EX28DRAFT_0147 0.73 -4.2 92,195 - EX28DRAFT_0147 0.73 -0.3 92,245 + EX28DRAFT_0147 0.76 +1.1 92,245 + EX28DRAFT_0147 0.76 +2.1 92,246 - EX28DRAFT_0147 0.76 -0.1 92,246 - EX28DRAFT_0147 0.76 +0.7 92,332 + EX28DRAFT_0147 0.82 +0.1 92,332 + EX28DRAFT_0147 0.82 +0.1 92,332 + EX28DRAFT_0147 0.82 -0.2 92,333 - EX28DRAFT_0147 0.82 +1.1 92,618 + -0.3 92,633 + -0.8 92,634 - -2.1 92,676 + +0.7 92,677 - -0.6 92,828 + EX28DRAFT_0148 0.11 -0.1 92,910 - EX28DRAFT_0148 0.15 -0.2 92,976 + EX28DRAFT_0148 0.19 +1.2 92,977 - EX28DRAFT_0148 0.19 -0.4 93,022 - EX28DRAFT_0148 0.21 -0.5 93,022 - EX28DRAFT_0148 0.21 -2.4 93,137 + EX28DRAFT_0148 0.27 +0.6 93,138 - EX28DRAFT_0148 0.27 -1.3 93,430 + EX28DRAFT_0148 0.42 +0.0 93,430 + EX28DRAFT_0148 0.42 +0.4 93,447 - EX28DRAFT_0148 0.43 -0.2 93,545 + EX28DRAFT_0148 0.48 +0.9 93,546 - EX28DRAFT_0148 0.48 +0.6
Or see this region's nucleotide sequence