Strain Fitness in Bosea sp. OAE506 around ABIE41_RS15200

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS15195 and ABIE41_RS15200 are separated by 53 nucleotidesABIE41_RS15200 and ABIE41_RS15205 are separated by 31 nucleotidesABIE41_RS15205 and ABIE41_RS15210 are separated by 177 nucleotides ABIE41_RS15195: ABIE41_RS15195 - MFS transporter, at 3,108,819 to 3,110,270 _RS15195 ABIE41_RS15200: ABIE41_RS15200 - hypothetical protein, at 3,110,324 to 3,110,947 _RS15200 ABIE41_RS15205: ABIE41_RS15205 - RlmE family RNA methyltransferase, at 3,110,979 to 3,111,659 _RS15205 ABIE41_RS15210: ABIE41_RS15210 - Ppx/GppA phosphatase family protein, at 3,111,837 to 3,113,042 _RS15210 Position (kb) 3110 3111Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3109.491 kb on + strand, within ABIE41_RS15195at 3109.491 kb on + strand, within ABIE41_RS15195at 3109.491 kb on + strand, within ABIE41_RS15195at 3109.491 kb on + strand, within ABIE41_RS15195at 3109.491 kb on + strand, within ABIE41_RS15195at 3109.491 kb on + strand, within ABIE41_RS15195at 3109.492 kb on - strand, within ABIE41_RS15195at 3109.492 kb on - strand, within ABIE41_RS15195at 3109.944 kb on + strand, within ABIE41_RS15195at 3109.945 kb on - strand, within ABIE41_RS15195at 3109.945 kb on - strand, within ABIE41_RS15195at 3110.357 kb on + strandat 3110.358 kb on - strandat 3110.472 kb on - strand, within ABIE41_RS15200at 3110.900 kb on + strandat 3110.901 kb on - strandat 3110.901 kb on - strandat 3110.901 kb on - strandat 3110.901 kb on - strandat 3110.901 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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3,109,491 + ABIE41_RS15195 0.46 +0.3
3,109,491 + ABIE41_RS15195 0.46 +2.3
3,109,491 + ABIE41_RS15195 0.46 +1.9
3,109,491 + ABIE41_RS15195 0.46 -1.4
3,109,491 + ABIE41_RS15195 0.46 -0.8
3,109,491 + ABIE41_RS15195 0.46 -1.6
3,109,492 - ABIE41_RS15195 0.46 -0.3
3,109,492 - ABIE41_RS15195 0.46 -1.5
3,109,944 + ABIE41_RS15195 0.77 -2.0
3,109,945 - ABIE41_RS15195 0.78 -0.5
3,109,945 - ABIE41_RS15195 0.78 +0.7
3,110,357 + +0.6
3,110,358 - -1.0
3,110,472 - ABIE41_RS15200 0.24 -4.2
3,110,900 + -1.0
3,110,901 - -1.4
3,110,901 - -0.3
3,110,901 - -0.1
3,110,901 - -0.0
3,110,901 - -0.4

Or see this region's nucleotide sequence