Strain Fitness in Bosea sp. OAE506 around ABIE41_RS14675

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS14670 and ABIE41_RS14675 are separated by 114 nucleotidesABIE41_RS14675 and ABIE41_RS14680 are separated by 173 nucleotides ABIE41_RS14670: ABIE41_RS14670 - DNA-directed RNA polymerase subunit alpha, at 3,002,087 to 3,003,103 _RS14670 ABIE41_RS14675: ABIE41_RS14675 - 50S ribosomal protein L17, at 3,003,218 to 3,003,634 _RS14675 ABIE41_RS14680: ABIE41_RS14680 - tripartite tricarboxylate transporter substrate-binding protein, at 3,003,808 to 3,004,773 _RS14680 Position (kb) 3003 3004Strain fitness (log2 ratio) -2 -1 0 1 2at 3003.098 kb on + strandat 3003.749 kb on + strandat 3003.749 kb on + strandat 3003.750 kb on - strandat 3003.750 kb on - strandat 3004.069 kb on + strand, within ABIE41_RS14680at 3004.070 kb on - strand, within ABIE41_RS14680at 3004.120 kb on + strand, within ABIE41_RS14680at 3004.135 kb on + strand, within ABIE41_RS14680at 3004.241 kb on - strand, within ABIE41_RS14680at 3004.301 kb on - strand, within ABIE41_RS14680at 3004.301 kb on - strand, within ABIE41_RS14680at 3004.357 kb on + strand, within ABIE41_RS14680

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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3,003,098 + -0.7
3,003,749 + -2.5
3,003,749 + -0.5
3,003,750 - -1.7
3,003,750 - +0.3
3,004,069 + ABIE41_RS14680 0.27 +2.6
3,004,070 - ABIE41_RS14680 0.27 -1.0
3,004,120 + ABIE41_RS14680 0.32 +1.4
3,004,135 + ABIE41_RS14680 0.34 -2.7
3,004,241 - ABIE41_RS14680 0.45 +1.7
3,004,301 - ABIE41_RS14680 0.51 +1.8
3,004,301 - ABIE41_RS14680 0.51 -0.7
3,004,357 + ABIE41_RS14680 0.57 -1.8

Or see this region's nucleotide sequence