Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS13595 and ABIE41_RS13600 are separated by 6 nucleotides ABIE41_RS13600 and ABIE41_RS13605 are separated by 7 nucleotides ABIE41_RS13605 and ABIE41_RS13610 are separated by 203 nucleotides
ABIE41_RS13595: ABIE41_RS13595 - adenylosuccinate lyase, at 2,792,498 to 2,793,805
_RS13595
ABIE41_RS13600: ABIE41_RS13600 - metallophosphoesterase family protein, at 2,793,812 to 2,794,558
_RS13600
ABIE41_RS13605: ABIE41_RS13605 - alpha/beta hydrolase, at 2,794,566 to 2,795,144
_RS13605
ABIE41_RS13610: ABIE41_RS13610 - branched-chain amino acid ABC transporter substrate-binding protein, at 2,795,348 to 2,796,463
_RS13610
Position (kb)
2793
2794
2795 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2794.169 kb on + strand, within ABIE41_RS13600 at 2794.169 kb on + strand, within ABIE41_RS13600 at 2794.169 kb on + strand, within ABIE41_RS13600 at 2794.170 kb on - strand, within ABIE41_RS13600 at 2794.170 kb on - strand, within ABIE41_RS13600 at 2794.170 kb on - strand, within ABIE41_RS13600 at 2794.350 kb on - strand, within ABIE41_RS13600 at 2794.444 kb on + strand, within ABIE41_RS13600 at 2795.211 kb on - strand at 2795.211 kb on - strand at 2795.362 kb on - strand at 2795.397 kb on + strand at 2795.397 kb on + strand at 2795.397 kb on + strand at 2795.397 kb on + strand at 2795.398 kb on - strand at 2795.406 kb on + strand at 2795.406 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 2,794,169 + ABIE41_RS13600 0.48 +0.3 2,794,169 + ABIE41_RS13600 0.48 +4.5 2,794,169 + ABIE41_RS13600 0.48 +2.1 2,794,170 - ABIE41_RS13600 0.48 -0.2 2,794,170 - ABIE41_RS13600 0.48 +1.4 2,794,170 - ABIE41_RS13600 0.48 +0.2 2,794,350 - ABIE41_RS13600 0.72 +0.0 2,794,444 + ABIE41_RS13600 0.85 +0.1 2,795,211 - -3.5 2,795,211 - -1.8 2,795,362 - +0.8 2,795,397 + +1.4 2,795,397 + +1.3 2,795,397 + -3.3 2,795,397 + -0.6 2,795,398 - +0.7 2,795,406 + +0.6 2,795,406 + -1.8
Or see this region's nucleotide sequence