Strain Fitness in Bosea sp. OAE506 around ABIE41_RS11895

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS11890 and ABIE41_RS11895 are separated by 99 nucleotidesABIE41_RS11895 and ABIE41_RS11900 overlap by 62 nucleotidesABIE41_RS11900 and ABIE41_RS11905 are separated by 97 nucleotides ABIE41_RS11890: ABIE41_RS11890 - mitochondrial fission ELM1 family protein, at 2,431,081 to 2,432,064 _RS11890 ABIE41_RS11895: ABIE41_RS11895 - Lrp/AsnC family transcriptional regulator, at 2,432,164 to 2,432,628 _RS11895 ABIE41_RS11900: ABIE41_RS11900 - GNAT family N-acetyltransferase, at 2,432,567 to 2,433,088 _RS11900 ABIE41_RS11905: ABIE41_RS11905 - transcription elongation factor GreA, at 2,433,186 to 2,433,662 _RS11905 Position (kb) 2432 2433Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2432.113 kb on - strandat 2432.132 kb on + strandat 2432.133 kb on - strandat 2432.687 kb on + strand, within ABIE41_RS11900at 2432.688 kb on - strand, within ABIE41_RS11900at 2432.898 kb on + strand, within ABIE41_RS11900at 2432.898 kb on + strand, within ABIE41_RS11900at 2432.898 kb on + strand, within ABIE41_RS11900at 2432.899 kb on - strand, within ABIE41_RS11900at 2432.967 kb on - strand, within ABIE41_RS11900at 2433.018 kb on - strand, within ABIE41_RS11900at 2433.018 kb on - strand, within ABIE41_RS11900at 2433.127 kb on - strandat 2433.349 kb on + strand, within ABIE41_RS11905at 2433.350 kb on - strand, within ABIE41_RS11905

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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2,432,113 - +1.5
2,432,132 + +1.2
2,432,133 - +0.8
2,432,687 + ABIE41_RS11900 0.23 -1.0
2,432,688 - ABIE41_RS11900 0.23 -3.9
2,432,898 + ABIE41_RS11900 0.63 +0.2
2,432,898 + ABIE41_RS11900 0.63 -2.9
2,432,898 + ABIE41_RS11900 0.63 +2.3
2,432,899 - ABIE41_RS11900 0.64 +0.3
2,432,967 - ABIE41_RS11900 0.77 +0.9
2,433,018 - ABIE41_RS11900 0.86 -0.0
2,433,018 - ABIE41_RS11900 0.86 +1.2
2,433,127 - -1.9
2,433,349 + ABIE41_RS11905 0.34 -1.8
2,433,350 - ABIE41_RS11905 0.34 -0.0

Or see this region's nucleotide sequence