Strain Fitness in Bosea sp. OAE506 around ABIE41_RS08995

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS08990 and ABIE41_RS08995 are separated by 134 nucleotidesABIE41_RS08995 and ABIE41_RS09000 are separated by 110 nucleotides ABIE41_RS08990: ABIE41_RS08990 - dihydrolipoyl dehydrogenase, at 1,862,029 to 1,863,429 _RS08990 ABIE41_RS08995: ABIE41_RS08995 - bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD, at 1,863,564 to 1,864,433 _RS08995 ABIE41_RS09000: ABIE41_RS09000 - cytosine deaminase, at 1,864,544 to 1,865,872 _RS09000 Position (kb) 1863 1864 1865Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1863.423 kb on + strandat 1863.423 kb on + strandat 1863.423 kb on + strandat 1863.423 kb on + strandat 1863.423 kb on + strandat 1863.424 kb on - strandat 1863.424 kb on - strandat 1863.424 kb on - strandat 1863.424 kb on - strandat 1863.596 kb on + strandat 1863.596 kb on + strandat 1863.597 kb on - strandat 1863.597 kb on - strandat 1863.886 kb on - strand, within ABIE41_RS08995at 1863.886 kb on - strand, within ABIE41_RS08995at 1863.973 kb on - strand, within ABIE41_RS08995at 1864.845 kb on + strand, within ABIE41_RS09000at 1865.165 kb on + strand, within ABIE41_RS09000at 1865.165 kb on + strand, within ABIE41_RS09000at 1865.165 kb on + strand, within ABIE41_RS09000at 1865.166 kb on - strand, within ABIE41_RS09000at 1865.166 kb on - strand, within ABIE41_RS09000

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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1,863,423 + +0.8
1,863,423 + -1.4
1,863,423 + +0.4
1,863,423 + +0.0
1,863,423 + -1.3
1,863,424 - +2.9
1,863,424 - +1.2
1,863,424 - -1.0
1,863,424 - -2.1
1,863,596 + +2.1
1,863,596 + -0.8
1,863,597 - -1.5
1,863,597 - +1.4
1,863,886 - ABIE41_RS08995 0.37 -3.1
1,863,886 - ABIE41_RS08995 0.37 +0.6
1,863,973 - ABIE41_RS08995 0.47 +2.4
1,864,845 + ABIE41_RS09000 0.23 -0.4
1,865,165 + ABIE41_RS09000 0.47 -2.2
1,865,165 + ABIE41_RS09000 0.47 -0.6
1,865,165 + ABIE41_RS09000 0.47 +0.0
1,865,166 - ABIE41_RS09000 0.47 -1.0
1,865,166 - ABIE41_RS09000 0.47 -0.1

Or see this region's nucleotide sequence