Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS08875 and ABIE41_RS08880 are separated by 135 nucleotides ABIE41_RS08880 and ABIE41_RS08885 are separated by 121 nucleotides
ABIE41_RS08875: ABIE41_RS08875 - polyphosphate kinase 2, at 1,836,530 to 1,837,555
_RS08875
ABIE41_RS08880: ABIE41_RS08880 - ATP-binding protein, at 1,837,691 to 1,838,746
_RS08880
ABIE41_RS08885: ABIE41_RS08885 - phosphate ABC transporter substrate-binding protein PstS, at 1,838,868 to 1,839,909
_RS08885
Position (kb) 1837
1838
1839 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1836.993 kb on + strand, within ABIE41_RS08875 at 1837.059 kb on + strand, within ABIE41_RS08875 at 1837.059 kb on + strand, within ABIE41_RS08875 at 1837.059 kb on + strand, within ABIE41_RS08875 at 1837.059 kb on + strand, within ABIE41_RS08875 at 1837.059 kb on + strand, within ABIE41_RS08875 at 1837.059 kb on + strand, within ABIE41_RS08875 at 1837.060 kb on - strand, within ABIE41_RS08875 at 1837.060 kb on - strand, within ABIE41_RS08875 at 1837.060 kb on - strand, within ABIE41_RS08875 at 1837.060 kb on - strand, within ABIE41_RS08875 at 1837.270 kb on - strand, within ABIE41_RS08875 at 1837.584 kb on - strand at 1837.584 kb on - strand at 1837.967 kb on - strand, within ABIE41_RS08880 at 1837.967 kb on - strand, within ABIE41_RS08880 at 1838.081 kb on - strand, within ABIE41_RS08880 at 1838.571 kb on - strand, within ABIE41_RS08880 at 1838.758 kb on - strand at 1839.037 kb on + strand, within ABIE41_RS08885 at 1839.250 kb on + strand, within ABIE41_RS08885 at 1839.250 kb on + strand, within ABIE41_RS08885 at 1839.250 kb on + strand, within ABIE41_RS08885 at 1839.250 kb on + strand, within ABIE41_RS08885 at 1839.250 kb on + strand, within ABIE41_RS08885 at 1839.251 kb on - strand, within ABIE41_RS08885 at 1839.340 kb on + strand, within ABIE41_RS08885 at 1839.382 kb on + strand, within ABIE41_RS08885 at 1839.382 kb on + strand, within ABIE41_RS08885 at 1839.382 kb on + strand, within ABIE41_RS08885 at 1839.517 kb on + strand, within ABIE41_RS08885 at 1839.526 kb on + strand, within ABIE41_RS08885 at 1839.526 kb on + strand, within ABIE41_RS08885 at 1839.527 kb on - strand, within ABIE41_RS08885 at 1839.532 kb on + strand, within ABIE41_RS08885 at 1839.532 kb on + strand, within ABIE41_RS08885 at 1839.532 kb on + strand, within ABIE41_RS08885 at 1839.556 kb on + strand, within ABIE41_RS08885 at 1839.556 kb on + strand, within ABIE41_RS08885 at 1839.556 kb on + strand, within ABIE41_RS08885 at 1839.557 kb on - strand, within ABIE41_RS08885 at 1839.557 kb on - strand, within ABIE41_RS08885
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 1,836,993 + ABIE41_RS08875 0.45 +0.5 1,837,059 + ABIE41_RS08875 0.52 -2.6 1,837,059 + ABIE41_RS08875 0.52 +0.0 1,837,059 + ABIE41_RS08875 0.52 -1.9 1,837,059 + ABIE41_RS08875 0.52 -0.8 1,837,059 + ABIE41_RS08875 0.52 +1.4 1,837,059 + ABIE41_RS08875 0.52 -0.8 1,837,060 - ABIE41_RS08875 0.52 +1.8 1,837,060 - ABIE41_RS08875 0.52 -0.3 1,837,060 - ABIE41_RS08875 0.52 +0.1 1,837,060 - ABIE41_RS08875 0.52 +2.0 1,837,270 - ABIE41_RS08875 0.72 +2.3 1,837,584 - -0.3 1,837,584 - -0.1 1,837,967 - ABIE41_RS08880 0.26 +0.7 1,837,967 - ABIE41_RS08880 0.26 -0.4 1,838,081 - ABIE41_RS08880 0.37 -1.9 1,838,571 - ABIE41_RS08880 0.83 -0.5 1,838,758 - -1.3 1,839,037 + ABIE41_RS08885 0.16 +1.9 1,839,250 + ABIE41_RS08885 0.37 +0.2 1,839,250 + ABIE41_RS08885 0.37 +0.3 1,839,250 + ABIE41_RS08885 0.37 -3.1 1,839,250 + ABIE41_RS08885 0.37 +0.4 1,839,250 + ABIE41_RS08885 0.37 -0.7 1,839,251 - ABIE41_RS08885 0.37 +1.5 1,839,340 + ABIE41_RS08885 0.45 +0.1 1,839,382 + ABIE41_RS08885 0.49 -0.5 1,839,382 + ABIE41_RS08885 0.49 +1.5 1,839,382 + ABIE41_RS08885 0.49 +0.4 1,839,517 + ABIE41_RS08885 0.62 -1.0 1,839,526 + ABIE41_RS08885 0.63 -2.9 1,839,526 + ABIE41_RS08885 0.63 -1.8 1,839,527 - ABIE41_RS08885 0.63 +0.0 1,839,532 + ABIE41_RS08885 0.64 -1.1 1,839,532 + ABIE41_RS08885 0.64 -0.3 1,839,532 + ABIE41_RS08885 0.64 -2.5 1,839,556 + ABIE41_RS08885 0.66 -2.5 1,839,556 + ABIE41_RS08885 0.66 -0.2 1,839,556 + ABIE41_RS08885 0.66 -1.8 1,839,557 - ABIE41_RS08885 0.66 +1.2 1,839,557 - ABIE41_RS08885 0.66 -1.5
Or see this region's nucleotide sequence