Strain Fitness in Bosea sp. OAE506 around ABIE41_RS06255

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS06250 and ABIE41_RS06255 are separated by 166 nucleotidesABIE41_RS06255 and ABIE41_RS06260 are separated by 132 nucleotides ABIE41_RS06250: ABIE41_RS06250 - sigma 54-interacting transcriptional regulator, at 1,289,497 to 1,291,365 _RS06250 ABIE41_RS06255: ABIE41_RS06255 - transporter, at 1,291,532 to 1,291,900 _RS06255 ABIE41_RS06260: ABIE41_RS06260 - NAD(P)-dependent oxidoreductase, at 1,292,033 to 1,293,037 _RS06260 Position (kb) 1291 1292Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1290.815 kb on + strand, within ABIE41_RS06250at 1290.815 kb on + strand, within ABIE41_RS06250at 1290.816 kb on - strand, within ABIE41_RS06250at 1290.816 kb on - strand, within ABIE41_RS06250at 1290.816 kb on - strand, within ABIE41_RS06250at 1290.856 kb on + strand, within ABIE41_RS06250at 1290.856 kb on + strand, within ABIE41_RS06250at 1290.856 kb on + strand, within ABIE41_RS06250at 1290.857 kb on - strand, within ABIE41_RS06250at 1290.915 kb on + strand, within ABIE41_RS06250at 1291.015 kb on + strand, within ABIE41_RS06250at 1291.015 kb on + strand, within ABIE41_RS06250at 1291.015 kb on + strand, within ABIE41_RS06250at 1291.015 kb on + strand, within ABIE41_RS06250at 1291.016 kb on - strand, within ABIE41_RS06250at 1291.016 kb on - strand, within ABIE41_RS06250at 1291.016 kb on - strand, within ABIE41_RS06250at 1291.016 kb on - strand, within ABIE41_RS06250at 1291.364 kb on - strandat 1291.378 kb on + strandat 1291.379 kb on - strandat 1291.379 kb on - strandat 1291.406 kb on + strandat 1291.416 kb on + strandat 1291.417 kb on - strandat 1291.760 kb on + strand, within ABIE41_RS06255at 1291.761 kb on - strand, within ABIE41_RS06255at 1291.761 kb on - strand, within ABIE41_RS06255at 1291.761 kb on - strand, within ABIE41_RS06255at 1291.767 kb on - strand, within ABIE41_RS06255at 1291.787 kb on + strand, within ABIE41_RS06255at 1291.787 kb on + strand, within ABIE41_RS06255at 1291.787 kb on + strand, within ABIE41_RS06255at 1291.787 kb on + strand, within ABIE41_RS06255at 1291.788 kb on - strand, within ABIE41_RS06255at 1291.788 kb on - strand, within ABIE41_RS06255at 1291.788 kb on - strand, within ABIE41_RS06255at 1291.788 kb on - strand, within ABIE41_RS06255at 1291.805 kb on + strand, within ABIE41_RS06255at 1291.806 kb on - strand, within ABIE41_RS06255at 1292.150 kb on + strand, within ABIE41_RS06260at 1292.150 kb on + strand, within ABIE41_RS06260at 1292.150 kb on + strand, within ABIE41_RS06260at 1292.150 kb on + strand, within ABIE41_RS06260at 1292.150 kb on + strand, within ABIE41_RS06260at 1292.150 kb on + strand, within ABIE41_RS06260at 1292.151 kb on - strand, within ABIE41_RS06260at 1292.151 kb on - strand, within ABIE41_RS06260at 1292.151 kb on - strand, within ABIE41_RS06260at 1292.151 kb on - strand, within ABIE41_RS06260at 1292.234 kb on + strand, within ABIE41_RS06260at 1292.234 kb on + strand, within ABIE41_RS06260at 1292.234 kb on + strand, within ABIE41_RS06260at 1292.234 kb on + strand, within ABIE41_RS06260at 1292.234 kb on + strand, within ABIE41_RS06260at 1292.235 kb on - strand, within ABIE41_RS06260at 1292.235 kb on - strand, within ABIE41_RS06260at 1292.235 kb on - strand, within ABIE41_RS06260at 1292.235 kb on - strand, within ABIE41_RS06260at 1292.235 kb on - strand, within ABIE41_RS06260at 1292.235 kb on - strand, within ABIE41_RS06260at 1292.309 kb on + strand, within ABIE41_RS06260at 1292.309 kb on + strand, within ABIE41_RS06260at 1292.309 kb on + strand, within ABIE41_RS06260at 1292.310 kb on - strand, within ABIE41_RS06260at 1292.310 kb on - strand, within ABIE41_RS06260at 1292.310 kb on - strand, within ABIE41_RS06260at 1292.310 kb on - strand, within ABIE41_RS06260at 1292.310 kb on - strand, within ABIE41_RS06260at 1292.310 kb on - strand, within ABIE41_RS06260at 1292.310 kb on - strand, within ABIE41_RS06260at 1292.390 kb on + strand, within ABIE41_RS06260at 1292.390 kb on + strand, within ABIE41_RS06260at 1292.390 kb on + strand, within ABIE41_RS06260at 1292.390 kb on + strand, within ABIE41_RS06260at 1292.391 kb on - strand, within ABIE41_RS06260at 1292.391 kb on - strand, within ABIE41_RS06260at 1292.391 kb on - strand, within ABIE41_RS06260at 1292.391 kb on - strand, within ABIE41_RS06260at 1292.392 kb on - strand, within ABIE41_RS06260at 1292.450 kb on + strand, within ABIE41_RS06260at 1292.451 kb on - strand, within ABIE41_RS06260at 1292.451 kb on - strand, within ABIE41_RS06260at 1292.492 kb on + strand, within ABIE41_RS06260at 1292.493 kb on - strand, within ABIE41_RS06260at 1292.493 kb on - strand, within ABIE41_RS06260at 1292.633 kb on + strand, within ABIE41_RS06260at 1292.634 kb on - strand, within ABIE41_RS06260at 1292.634 kb on - strand, within ABIE41_RS06260at 1292.641 kb on + strand, within ABIE41_RS06260at 1292.642 kb on - strand, within ABIE41_RS06260at 1292.642 kb on - strand, within ABIE41_RS06260at 1292.708 kb on + strand, within ABIE41_RS06260at 1292.708 kb on + strand, within ABIE41_RS06260at 1292.708 kb on + strand, within ABIE41_RS06260at 1292.708 kb on + strand, within ABIE41_RS06260at 1292.708 kb on + strand, within ABIE41_RS06260at 1292.708 kb on + strand, within ABIE41_RS06260at 1292.708 kb on + strand, within ABIE41_RS06260at 1292.709 kb on - strand, within ABIE41_RS06260at 1292.709 kb on - strand, within ABIE41_RS06260at 1292.709 kb on - strand, within ABIE41_RS06260at 1292.710 kb on + strand, within ABIE41_RS06260at 1292.710 kb on + strand, within ABIE41_RS06260at 1292.710 kb on + strand, within ABIE41_RS06260at 1292.710 kb on + strand, within ABIE41_RS06260at 1292.710 kb on + strand, within ABIE41_RS06260at 1292.711 kb on - strand, within ABIE41_RS06260at 1292.711 kb on - strand, within ABIE41_RS06260at 1292.873 kb on + strand, within ABIE41_RS06260at 1292.873 kb on + strand, within ABIE41_RS06260at 1292.873 kb on + strand, within ABIE41_RS06260at 1292.873 kb on + strand, within ABIE41_RS06260at 1292.873 kb on + strand, within ABIE41_RS06260at 1292.873 kb on + strand, within ABIE41_RS06260at 1292.873 kb on + strand, within ABIE41_RS06260at 1292.873 kb on + strand, within ABIE41_RS06260at 1292.873 kb on + strand, within ABIE41_RS06260at 1292.873 kb on + strand, within ABIE41_RS06260at 1292.873 kb on + strand, within ABIE41_RS06260at 1292.873 kb on + strand, within ABIE41_RS06260at 1292.874 kb on - strand, within ABIE41_RS06260at 1292.874 kb on - strand, within ABIE41_RS06260at 1292.874 kb on - strand, within ABIE41_RS06260at 1292.874 kb on - strand, within ABIE41_RS06260at 1292.874 kb on - strand, within ABIE41_RS06260at 1292.874 kb on - strand, within ABIE41_RS06260at 1292.874 kb on - strand, within ABIE41_RS06260at 1292.874 kb on - strand, within ABIE41_RS06260at 1292.874 kb on - strand, within ABIE41_RS06260at 1292.874 kb on - strand, within ABIE41_RS06260at 1292.874 kb on - strand, within ABIE41_RS06260

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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1,290,815 + ABIE41_RS06250 0.71 +1.3
1,290,815 + ABIE41_RS06250 0.71 -1.0
1,290,816 - ABIE41_RS06250 0.71 +0.6
1,290,816 - ABIE41_RS06250 0.71 -1.5
1,290,816 - ABIE41_RS06250 0.71 -0.2
1,290,856 + ABIE41_RS06250 0.73 -3.3
1,290,856 + ABIE41_RS06250 0.73 -2.6
1,290,856 + ABIE41_RS06250 0.73 -2.4
1,290,857 - ABIE41_RS06250 0.73 -1.6
1,290,915 + ABIE41_RS06250 0.76 +0.5
1,291,015 + ABIE41_RS06250 0.81 -3.2
1,291,015 + ABIE41_RS06250 0.81 +1.8
1,291,015 + ABIE41_RS06250 0.81 -0.7
1,291,015 + ABIE41_RS06250 0.81 +0.4
1,291,016 - ABIE41_RS06250 0.81 +1.4
1,291,016 - ABIE41_RS06250 0.81 +0.6
1,291,016 - ABIE41_RS06250 0.81 +0.0
1,291,016 - ABIE41_RS06250 0.81 +2.9
1,291,364 - +2.5
1,291,378 + +1.2
1,291,379 - +2.3
1,291,379 - -2.7
1,291,406 + +0.3
1,291,416 + -1.6
1,291,417 - -0.7
1,291,760 + ABIE41_RS06255 0.62 +0.5
1,291,761 - ABIE41_RS06255 0.62 -4.1
1,291,761 - ABIE41_RS06255 0.62 -0.5
1,291,761 - ABIE41_RS06255 0.62 -2.0
1,291,767 - ABIE41_RS06255 0.64 -0.5
1,291,787 + ABIE41_RS06255 0.69 +0.3
1,291,787 + ABIE41_RS06255 0.69 -0.0
1,291,787 + ABIE41_RS06255 0.69 -0.2
1,291,787 + ABIE41_RS06255 0.69 -0.0
1,291,788 - ABIE41_RS06255 0.69 -0.3
1,291,788 - ABIE41_RS06255 0.69 -1.1
1,291,788 - ABIE41_RS06255 0.69 -0.8
1,291,788 - ABIE41_RS06255 0.69 -0.2
1,291,805 + ABIE41_RS06255 0.74 -2.5
1,291,806 - ABIE41_RS06255 0.74 -2.1
1,292,150 + ABIE41_RS06260 0.12 +0.3
1,292,150 + ABIE41_RS06260 0.12 +0.0
1,292,150 + ABIE41_RS06260 0.12 -0.7
1,292,150 + ABIE41_RS06260 0.12 -2.5
1,292,150 + ABIE41_RS06260 0.12 +0.9
1,292,150 + ABIE41_RS06260 0.12 +3.0
1,292,151 - ABIE41_RS06260 0.12 +0.0
1,292,151 - ABIE41_RS06260 0.12 -0.0
1,292,151 - ABIE41_RS06260 0.12 +0.8
1,292,151 - ABIE41_RS06260 0.12 +0.8
1,292,234 + ABIE41_RS06260 0.20 -1.2
1,292,234 + ABIE41_RS06260 0.20 -0.8
1,292,234 + ABIE41_RS06260 0.20 -0.9
1,292,234 + ABIE41_RS06260 0.20 -1.9
1,292,234 + ABIE41_RS06260 0.20 +0.3
1,292,235 - ABIE41_RS06260 0.20 -1.1
1,292,235 - ABIE41_RS06260 0.20 +4.7
1,292,235 - ABIE41_RS06260 0.20 -1.6
1,292,235 - ABIE41_RS06260 0.20 -1.5
1,292,235 - ABIE41_RS06260 0.20 +1.3
1,292,235 - ABIE41_RS06260 0.20 +0.3
1,292,309 + ABIE41_RS06260 0.27 -1.1
1,292,309 + ABIE41_RS06260 0.27 +2.9
1,292,309 + ABIE41_RS06260 0.27 -0.2
1,292,310 - ABIE41_RS06260 0.28 -0.5
1,292,310 - ABIE41_RS06260 0.28 -0.8
1,292,310 - ABIE41_RS06260 0.28 -1.4
1,292,310 - ABIE41_RS06260 0.28 -1.2
1,292,310 - ABIE41_RS06260 0.28 -1.4
1,292,310 - ABIE41_RS06260 0.28 +0.8
1,292,310 - ABIE41_RS06260 0.28 -2.4
1,292,390 + ABIE41_RS06260 0.36 -0.3
1,292,390 + ABIE41_RS06260 0.36 -1.6
1,292,390 + ABIE41_RS06260 0.36 -0.3
1,292,390 + ABIE41_RS06260 0.36 +1.2
1,292,391 - ABIE41_RS06260 0.36 -0.8
1,292,391 - ABIE41_RS06260 0.36 +0.2
1,292,391 - ABIE41_RS06260 0.36 -2.2
1,292,391 - ABIE41_RS06260 0.36 -2.9
1,292,392 - ABIE41_RS06260 0.36 -1.6
1,292,450 + ABIE41_RS06260 0.41 -2.0
1,292,451 - ABIE41_RS06260 0.42 -0.7
1,292,451 - ABIE41_RS06260 0.42 +1.0
1,292,492 + ABIE41_RS06260 0.46 +0.5
1,292,493 - ABIE41_RS06260 0.46 -0.7
1,292,493 - ABIE41_RS06260 0.46 -2.7
1,292,633 + ABIE41_RS06260 0.60 +0.6
1,292,634 - ABIE41_RS06260 0.60 +0.5
1,292,634 - ABIE41_RS06260 0.60 -2.3
1,292,641 + ABIE41_RS06260 0.60 -0.5
1,292,642 - ABIE41_RS06260 0.61 -2.2
1,292,642 - ABIE41_RS06260 0.61 -1.4
1,292,708 + ABIE41_RS06260 0.67 +0.1
1,292,708 + ABIE41_RS06260 0.67 +1.2
1,292,708 + ABIE41_RS06260 0.67 +2.3
1,292,708 + ABIE41_RS06260 0.67 -1.1
1,292,708 + ABIE41_RS06260 0.67 -0.7
1,292,708 + ABIE41_RS06260 0.67 -1.0
1,292,708 + ABIE41_RS06260 0.67 +1.0
1,292,709 - ABIE41_RS06260 0.67 -0.5
1,292,709 - ABIE41_RS06260 0.67 -1.8
1,292,709 - ABIE41_RS06260 0.67 +0.7
1,292,710 + ABIE41_RS06260 0.67 -3.7
1,292,710 + ABIE41_RS06260 0.67 +0.6
1,292,710 + ABIE41_RS06260 0.67 +0.5
1,292,710 + ABIE41_RS06260 0.67 +0.2
1,292,710 + ABIE41_RS06260 0.67 +1.3
1,292,711 - ABIE41_RS06260 0.67 -0.0
1,292,711 - ABIE41_RS06260 0.67 +2.7
1,292,873 + ABIE41_RS06260 0.84 +1.3
1,292,873 + ABIE41_RS06260 0.84 +0.4
1,292,873 + ABIE41_RS06260 0.84 -1.2
1,292,873 + ABIE41_RS06260 0.84 +2.4
1,292,873 + ABIE41_RS06260 0.84 -1.4
1,292,873 + ABIE41_RS06260 0.84 -3.4
1,292,873 + ABIE41_RS06260 0.84 +0.4
1,292,873 + ABIE41_RS06260 0.84 -0.8
1,292,873 + ABIE41_RS06260 0.84 -2.0
1,292,873 + ABIE41_RS06260 0.84 +0.0
1,292,873 + ABIE41_RS06260 0.84 +0.6
1,292,873 + ABIE41_RS06260 0.84 +0.9
1,292,874 - ABIE41_RS06260 0.84 +0.8
1,292,874 - ABIE41_RS06260 0.84 +3.3
1,292,874 - ABIE41_RS06260 0.84 -2.2
1,292,874 - ABIE41_RS06260 0.84 -0.5
1,292,874 - ABIE41_RS06260 0.84 -4.6
1,292,874 - ABIE41_RS06260 0.84 -0.6
1,292,874 - ABIE41_RS06260 0.84 -1.1
1,292,874 - ABIE41_RS06260 0.84 -1.5
1,292,874 - ABIE41_RS06260 0.84 -1.2
1,292,874 - ABIE41_RS06260 0.84 +1.6
1,292,874 - ABIE41_RS06260 0.84 -1.4

Or see this region's nucleotide sequence