Strain Fitness in Bosea sp. OAE506 around ABIE41_RS04995

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS04985 and ABIE41_RS04990 are separated by 13 nucleotidesABIE41_RS04990 and ABIE41_RS04995 overlap by 4 nucleotidesABIE41_RS04995 and ABIE41_RS05000 are separated by 116 nucleotidesABIE41_RS05000 and ABIE41_RS05005 are separated by 4 nucleotides ABIE41_RS04985: ABIE41_RS04985 - heme ABC transporter permease, at 1,038,004 to 1,038,765 _RS04985 ABIE41_RS04990: ABIE41_RS04990 - heme exporter protein CcmD, at 1,038,779 to 1,038,952 _RS04990 ABIE41_RS04995: ABIE41_RS04995 - DsbE family thiol:disulfide interchange protein, at 1,038,949 to 1,039,554 _RS04995 ABIE41_RS05000: ABIE41_RS05000 - phosphoribosylformylglycinamidine synthase subunit PurQ, at 1,039,671 to 1,040,366 _RS05000 ABIE41_RS05005: ABIE41_RS05005 - phosphoribosylformylglycinamidine synthase subunit PurS, at 1,040,371 to 1,040,613 _RS05005 Position (kb) 1038 1039 1040Strain fitness (log2 ratio) -2 -1 0 1 2at 1037.953 kb on + strandat 1037.953 kb on + strandat 1037.953 kb on + strandat 1037.953 kb on + strandat 1039.014 kb on - strand, within ABIE41_RS04995at 1039.795 kb on + strand, within ABIE41_RS05000at 1039.795 kb on + strand, within ABIE41_RS05000at 1039.796 kb on - strand, within ABIE41_RS05000at 1039.796 kb on - strand, within ABIE41_RS05000at 1039.796 kb on - strand, within ABIE41_RS05000at 1039.796 kb on - strand, within ABIE41_RS05000at 1039.867 kb on + strand, within ABIE41_RS05000at 1039.927 kb on + strand, within ABIE41_RS05000at 1039.927 kb on + strand, within ABIE41_RS05000at 1039.927 kb on + strand, within ABIE41_RS05000at 1039.927 kb on + strand, within ABIE41_RS05000at 1039.927 kb on + strand, within ABIE41_RS05000at 1039.927 kb on + strand, within ABIE41_RS05000at 1039.928 kb on - strand, within ABIE41_RS05000at 1039.928 kb on - strand, within ABIE41_RS05000at 1039.978 kb on + strand, within ABIE41_RS05000at 1039.978 kb on + strand, within ABIE41_RS05000at 1039.988 kb on + strand, within ABIE41_RS05000at 1039.990 kb on + strand, within ABIE41_RS05000at 1039.991 kb on - strand, within ABIE41_RS05000at 1040.125 kb on + strand, within ABIE41_RS05000at 1040.126 kb on - strand, within ABIE41_RS05000at 1040.200 kb on + strand, within ABIE41_RS05000at 1040.200 kb on + strand, within ABIE41_RS05000at 1040.393 kb on + strandat 1040.393 kb on + strandat 1040.393 kb on + strandat 1040.393 kb on + strandat 1040.393 kb on + strandat 1040.393 kb on + strandat 1040.393 kb on + strandat 1040.394 kb on - strandat 1040.394 kb on - strandat 1040.394 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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1,037,953 + +1.7
1,037,953 + +0.4
1,037,953 + -0.7
1,037,953 + +0.2
1,039,014 - ABIE41_RS04995 0.11 -2.1
1,039,795 + ABIE41_RS05000 0.18 +0.6
1,039,795 + ABIE41_RS05000 0.18 +2.4
1,039,796 - ABIE41_RS05000 0.18 -1.8
1,039,796 - ABIE41_RS05000 0.18 +1.3
1,039,796 - ABIE41_RS05000 0.18 -1.6
1,039,796 - ABIE41_RS05000 0.18 +0.3
1,039,867 + ABIE41_RS05000 0.28 -2.3
1,039,927 + ABIE41_RS05000 0.37 +0.4
1,039,927 + ABIE41_RS05000 0.37 -0.0
1,039,927 + ABIE41_RS05000 0.37 -1.7
1,039,927 + ABIE41_RS05000 0.37 -0.1
1,039,927 + ABIE41_RS05000 0.37 -1.1
1,039,927 + ABIE41_RS05000 0.37 -1.9
1,039,928 - ABIE41_RS05000 0.37 -1.1
1,039,928 - ABIE41_RS05000 0.37 +0.2
1,039,978 + ABIE41_RS05000 0.44 -0.2
1,039,978 + ABIE41_RS05000 0.44 -1.6
1,039,988 + ABIE41_RS05000 0.46 +2.2
1,039,990 + ABIE41_RS05000 0.46 -0.2
1,039,991 - ABIE41_RS05000 0.46 +0.3
1,040,125 + ABIE41_RS05000 0.65 -0.2
1,040,126 - ABIE41_RS05000 0.65 +0.6
1,040,200 + ABIE41_RS05000 0.76 +0.8
1,040,200 + ABIE41_RS05000 0.76 -1.1
1,040,393 + -0.6
1,040,393 + +0.8
1,040,393 + -0.7
1,040,393 + -2.3
1,040,393 + +0.8
1,040,393 + -0.5
1,040,393 + +1.2
1,040,394 - +2.1
1,040,394 - +2.2
1,040,394 - +0.9

Or see this region's nucleotide sequence