Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS04970 and ABIE41_RS04975 overlap by 4 nucleotides ABIE41_RS04975 and ABIE41_RS04980 are separated by 2 nucleotides ABIE41_RS04980 and ABIE41_RS04985 are separated by 316 nucleotides
ABIE41_RS04970: ABIE41_RS04970 - heme ABC exporter ATP-binding protein CcmA, at 1,036,157 to 1,036,777
_RS04970
ABIE41_RS04975: ABIE41_RS04975 - heme exporter protein CcmB, at 1,036,774 to 1,037,442
_RS04975
ABIE41_RS04980: ABIE41_RS04980 - hypothetical protein, at 1,037,445 to 1,037,687
_RS04980
ABIE41_RS04985: ABIE41_RS04985 - heme ABC transporter permease, at 1,038,004 to 1,038,765
_RS04985
Position (kb)
1037
1038 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1037.440 kb on + strand at 1037.440 kb on + strand at 1037.440 kb on + strand at 1037.440 kb on + strand at 1037.440 kb on + strand at 1037.441 kb on - strand at 1037.567 kb on + strand, within ABIE41_RS04980 at 1037.567 kb on + strand, within ABIE41_RS04980 at 1037.567 kb on + strand, within ABIE41_RS04980 at 1037.568 kb on - strand, within ABIE41_RS04980 at 1037.568 kb on - strand, within ABIE41_RS04980 at 1037.755 kb on - strand at 1037.953 kb on + strand at 1037.953 kb on + strand at 1037.953 kb on + strand at 1037.953 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 1,037,440 + -0.2 1,037,440 + -0.5 1,037,440 + -0.5 1,037,440 + -1.6 1,037,440 + -0.3 1,037,441 - +0.8 1,037,567 + ABIE41_RS04980 0.50 +0.0 1,037,567 + ABIE41_RS04980 0.50 +1.7 1,037,567 + ABIE41_RS04980 0.50 -0.2 1,037,568 - ABIE41_RS04980 0.51 -2.5 1,037,568 - ABIE41_RS04980 0.51 +2.4 1,037,755 - -0.5 1,037,953 + +1.7 1,037,953 + +0.4 1,037,953 + -0.7 1,037,953 + +0.2
Or see this region's nucleotide sequence