Strain Fitness in Bosea sp. OAE506 around ABIE41_RS04580

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS04575 and ABIE41_RS04580 are separated by 19 nucleotidesABIE41_RS04580 and ABIE41_RS04585 overlap by 1 nucleotidesABIE41_RS04585 and ABIE41_RS04590 are separated by 225 nucleotidesABIE41_RS04590 and ABIE41_RS04595 are separated by 266 nucleotides ABIE41_RS04575: ABIE41_RS04575 - DNA ligase D, at 953,393 to 956,074 _RS04575 ABIE41_RS04580: ABIE41_RS04580 - Ku protein, at 956,094 to 956,999 _RS04580 ABIE41_RS04585: ABIE41_RS04585 - hypothetical protein, at 956,999 to 957,223 _RS04585 ABIE41_RS04590: ABIE41_RS04590 - 30S ribosomal protein S15, at 957,449 to 957,718 _RS04590 ABIE41_RS04595: ABIE41_RS04595 - polyribonucleotide nucleotidyltransferase, at 957,985 to 960,153 _RS04595 Position (kb) 956 957Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 955.283 kb on + strand, within ABIE41_RS04575at 955.299 kb on - strand, within ABIE41_RS04575at 955.508 kb on - strand, within ABIE41_RS04575at 955.920 kb on + strandat 955.921 kb on - strandat 956.055 kb on + strandat 956.495 kb on - strand, within ABIE41_RS04580at 956.560 kb on + strand, within ABIE41_RS04580at 956.659 kb on + strand, within ABIE41_RS04580at 956.659 kb on + strand, within ABIE41_RS04580at 956.659 kb on + strand, within ABIE41_RS04580at 956.659 kb on + strand, within ABIE41_RS04580at 956.659 kb on + strand, within ABIE41_RS04580at 956.659 kb on + strand, within ABIE41_RS04580at 956.660 kb on - strand, within ABIE41_RS04580at 956.660 kb on - strand, within ABIE41_RS04580at 956.660 kb on - strand, within ABIE41_RS04580at 956.661 kb on - strand, within ABIE41_RS04580at 956.662 kb on + strand, within ABIE41_RS04580at 956.663 kb on - strand, within ABIE41_RS04580at 956.663 kb on - strand, within ABIE41_RS04580at 956.677 kb on + strand, within ABIE41_RS04580at 956.677 kb on + strand, within ABIE41_RS04580at 956.677 kb on + strand, within ABIE41_RS04580at 956.677 kb on + strand, within ABIE41_RS04580at 956.677 kb on + strand, within ABIE41_RS04580at 956.678 kb on - strand, within ABIE41_RS04580at 956.678 kb on - strand, within ABIE41_RS04580at 956.678 kb on - strand, within ABIE41_RS04580at 956.678 kb on - strand, within ABIE41_RS04580at 956.678 kb on - strand, within ABIE41_RS04580at 956.779 kb on + strand, within ABIE41_RS04580at 956.779 kb on + strand, within ABIE41_RS04580at 956.780 kb on - strand, within ABIE41_RS04580at 956.780 kb on - strand, within ABIE41_RS04580at 956.800 kb on + strand, within ABIE41_RS04580at 956.801 kb on - strand, within ABIE41_RS04580at 956.801 kb on - strand, within ABIE41_RS04580at 956.854 kb on + strand, within ABIE41_RS04580at 956.854 kb on + strand, within ABIE41_RS04580at 956.854 kb on + strand, within ABIE41_RS04580at 956.854 kb on + strand, within ABIE41_RS04580at 956.854 kb on + strand, within ABIE41_RS04580at 956.854 kb on + strand, within ABIE41_RS04580at 956.854 kb on + strand, within ABIE41_RS04580at 956.855 kb on - strand, within ABIE41_RS04580at 956.855 kb on - strand, within ABIE41_RS04580at 956.855 kb on - strand, within ABIE41_RS04580at 956.855 kb on - strand, within ABIE41_RS04580at 956.871 kb on - strand, within ABIE41_RS04580at 956.971 kb on + strandat 956.972 kb on - strandat 957.315 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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955,283 + ABIE41_RS04575 0.70 +0.9
955,299 - ABIE41_RS04575 0.71 +1.4
955,508 - ABIE41_RS04575 0.79 -1.5
955,920 + -1.4
955,921 - +2.5
956,055 + -3.1
956,495 - ABIE41_RS04580 0.44 -0.9
956,560 + ABIE41_RS04580 0.51 +1.5
956,659 + ABIE41_RS04580 0.62 -3.2
956,659 + ABIE41_RS04580 0.62 -0.9
956,659 + ABIE41_RS04580 0.62 -1.2
956,659 + ABIE41_RS04580 0.62 -0.9
956,659 + ABIE41_RS04580 0.62 -0.5
956,659 + ABIE41_RS04580 0.62 +0.5
956,660 - ABIE41_RS04580 0.62 -0.9
956,660 - ABIE41_RS04580 0.62 +0.4
956,660 - ABIE41_RS04580 0.62 -1.1
956,661 - ABIE41_RS04580 0.63 +1.6
956,662 + ABIE41_RS04580 0.63 +0.8
956,663 - ABIE41_RS04580 0.63 +1.1
956,663 - ABIE41_RS04580 0.63 +0.5
956,677 + ABIE41_RS04580 0.64 +0.4
956,677 + ABIE41_RS04580 0.64 -0.3
956,677 + ABIE41_RS04580 0.64 -0.9
956,677 + ABIE41_RS04580 0.64 -1.3
956,677 + ABIE41_RS04580 0.64 -0.0
956,678 - ABIE41_RS04580 0.64 +0.0
956,678 - ABIE41_RS04580 0.64 -2.8
956,678 - ABIE41_RS04580 0.64 +0.5
956,678 - ABIE41_RS04580 0.64 +0.6
956,678 - ABIE41_RS04580 0.64 -2.2
956,779 + ABIE41_RS04580 0.76 +2.0
956,779 + ABIE41_RS04580 0.76 -0.2
956,780 - ABIE41_RS04580 0.76 -0.4
956,780 - ABIE41_RS04580 0.76 +1.4
956,800 + ABIE41_RS04580 0.78 -0.9
956,801 - ABIE41_RS04580 0.78 +0.5
956,801 - ABIE41_RS04580 0.78 +1.8
956,854 + ABIE41_RS04580 0.84 -0.2
956,854 + ABIE41_RS04580 0.84 +0.1
956,854 + ABIE41_RS04580 0.84 -0.8
956,854 + ABIE41_RS04580 0.84 +1.5
956,854 + ABIE41_RS04580 0.84 +0.9
956,854 + ABIE41_RS04580 0.84 -0.4
956,854 + ABIE41_RS04580 0.84 -0.7
956,855 - ABIE41_RS04580 0.84 +1.2
956,855 - ABIE41_RS04580 0.84 -0.2
956,855 - ABIE41_RS04580 0.84 +0.1
956,855 - ABIE41_RS04580 0.84 -0.2
956,871 - ABIE41_RS04580 0.86 -2.1
956,971 + -0.4
956,972 - -1.4
957,315 + -0.8

Or see this region's nucleotide sequence