Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS29075 and ABID97_RS29080 are separated by 14 nucleotides ABID97_RS29080 and ABID97_RS29085 are separated by 107 nucleotides ABID97_RS29085 and ABID97_RS29090 are separated by 5 nucleotides ABID97_RS29090 and ABID97_RS29095 overlap by 8 nucleotides
ABID97_RS29075: ABID97_RS29075 - hydrolase, at 734,160 to 734,813
_RS29075
ABID97_RS29080: ABID97_RS29080 - DUF1427 family protein, at 734,828 to 735,103
_RS29080
ABID97_RS29085: ABID97_RS29085 - amidohydrolase, at 735,211 to 737,103
_RS29085
ABID97_RS29090: ABID97_RS29090 - DoxX family protein, at 737,109 to 737,504
_RS29090
ABID97_RS29095: ABID97_RS29095 - MFS transporter, at 737,497 to 739,098
_RS29095
Position (kb) 735
736
737
738 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 734.676 kb on + strand, within ABID97_RS29075 at 734.677 kb on - strand, within ABID97_RS29075 at 734.718 kb on + strand, within ABID97_RS29075 at 734.718 kb on + strand, within ABID97_RS29075 at 734.719 kb on - strand, within ABID97_RS29075 at 734.719 kb on - strand, within ABID97_RS29075 at 734.719 kb on - strand, within ABID97_RS29075 at 734.719 kb on - strand, within ABID97_RS29075 at 734.778 kb on + strand at 734.837 kb on + strand at 734.838 kb on - strand at 734.838 kb on - strand at 734.879 kb on + strand, within ABID97_RS29080 at 735.661 kb on + strand, within ABID97_RS29085 at 735.662 kb on - strand, within ABID97_RS29085 at 735.706 kb on + strand, within ABID97_RS29085 at 735.707 kb on - strand, within ABID97_RS29085 at 736.003 kb on + strand, within ABID97_RS29085 at 736.004 kb on - strand, within ABID97_RS29085 at 736.072 kb on + strand, within ABID97_RS29085 at 736.072 kb on + strand, within ABID97_RS29085 at 736.073 kb on - strand, within ABID97_RS29085 at 736.091 kb on - strand, within ABID97_RS29085 at 736.550 kb on - strand, within ABID97_RS29085 at 737.169 kb on + strand, within ABID97_RS29090 at 737.492 kb on + strand at 737.492 kb on + strand at 738.046 kb on + strand, within ABID97_RS29095 at 738.046 kb on + strand, within ABID97_RS29095 at 738.046 kb on + strand, within ABID97_RS29095 at 738.047 kb on - strand, within ABID97_RS29095 at 738.067 kb on + strand, within ABID97_RS29095 at 738.067 kb on + strand, within ABID97_RS29095 at 738.068 kb on - strand at 738.068 kb on - strand, within ABID97_RS29095
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 734,676 + ABID97_RS29075 0.79 -2.3 734,677 - ABID97_RS29075 0.79 -0.8 734,718 + ABID97_RS29075 0.85 +0.6 734,718 + ABID97_RS29075 0.85 +0.0 734,719 - ABID97_RS29075 0.85 +0.1 734,719 - ABID97_RS29075 0.85 -1.0 734,719 - ABID97_RS29075 0.85 -0.5 734,719 - ABID97_RS29075 0.85 +0.2 734,778 + +1.1 734,837 + -0.2 734,838 - +0.9 734,838 - +0.7 734,879 + ABID97_RS29080 0.18 -0.3 735,661 + ABID97_RS29085 0.24 -0.8 735,662 - ABID97_RS29085 0.24 -0.9 735,706 + ABID97_RS29085 0.26 +1.0 735,707 - ABID97_RS29085 0.26 +0.3 736,003 + ABID97_RS29085 0.42 -0.3 736,004 - ABID97_RS29085 0.42 -0.1 736,072 + ABID97_RS29085 0.45 -0.4 736,072 + ABID97_RS29085 0.45 -1.3 736,073 - ABID97_RS29085 0.46 -2.9 736,091 - ABID97_RS29085 0.46 -2.4 736,550 - ABID97_RS29085 0.71 +0.2 737,169 + ABID97_RS29090 0.15 +0.7 737,492 + -0.7 737,492 + +0.3 738,046 + ABID97_RS29095 0.34 +0.8 738,046 + ABID97_RS29095 0.34 +0.2 738,046 + ABID97_RS29095 0.34 -0.3 738,047 - ABID97_RS29095 0.34 -0.6 738,067 + ABID97_RS29095 0.36 -0.3 738,067 + ABID97_RS29095 0.36 -0.7 738,068 - +1.9 738,068 - ABID97_RS29095 0.36 -0.5
Or see this region's nucleotide sequence