Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26660

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS26650 and ABID97_RS26655 are separated by 105 nucleotidesABID97_RS26655 and ABID97_RS26660 are separated by 24 nucleotidesABID97_RS26660 and ABID97_RS26665 are separated by 162 nucleotidesABID97_RS26665 and ABID97_RS26670 are separated by 24 nucleotides ABID97_RS26650: ABID97_RS26650 - zeta toxin family protein, at 254,089 to 254,682 _RS26650 ABID97_RS26655: ABID97_RS26655 - hypothetical protein, at 254,788 to 255,072 _RS26655 ABID97_RS26660: ABID97_RS26660 - hypothetical protein, at 255,097 to 255,471 _RS26660 ABID97_RS26665: ABID97_RS26665 - DUF1801 domain-containing protein, at 255,634 to 256,011 _RS26665 ABID97_RS26670: ABID97_RS26670 - DUF1801 domain-containing protein, at 256,036 to 256,461 _RS26670 Position (kb) 255 256Strain fitness (log2 ratio) -2 -1 0 1at 254.162 kb on + strand, within ABID97_RS26650at 254.162 kb on + strand, within ABID97_RS26650at 254.163 kb on - strand, within ABID97_RS26650at 254.163 kb on - strand, within ABID97_RS26650at 254.389 kb on + strand, within ABID97_RS26650at 254.656 kb on + strandat 255.026 kb on + strand, within ABID97_RS26655at 255.027 kb on - strand, within ABID97_RS26655at 255.027 kb on - strand, within ABID97_RS26655at 255.027 kb on - strand, within ABID97_RS26655at 255.125 kb on + strandat 255.126 kb on - strandat 255.207 kb on - strand, within ABID97_RS26660at 255.207 kb on - strand, within ABID97_RS26660at 255.230 kb on + strand, within ABID97_RS26660at 255.249 kb on - strand, within ABID97_RS26660at 255.272 kb on + strand, within ABID97_RS26660at 255.272 kb on + strand, within ABID97_RS26660at 255.272 kb on + strand, within ABID97_RS26660at 255.276 kb on - strand, within ABID97_RS26660at 255.315 kb on - strand, within ABID97_RS26660at 255.315 kb on - strand, within ABID97_RS26660at 255.315 kb on - strand, within ABID97_RS26660at 255.318 kb on - strand, within ABID97_RS26660at 255.507 kb on + strandat 255.507 kb on + strandat 255.670 kb on + strandat 255.671 kb on - strandat 256.181 kb on - strand, within ABID97_RS26670at 256.237 kb on - strand, within ABID97_RS26670at 256.256 kb on + strand, within ABID97_RS26670

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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254,162 + ABID97_RS26650 0.12 -2.3
254,162 + ABID97_RS26650 0.12 -0.1
254,163 - ABID97_RS26650 0.12 +0.4
254,163 - ABID97_RS26650 0.12 -1.9
254,389 + ABID97_RS26650 0.51 -0.3
254,656 + -0.3
255,026 + ABID97_RS26655 0.84 -0.4
255,027 - ABID97_RS26655 0.84 +0.2
255,027 - ABID97_RS26655 0.84 -0.4
255,027 - ABID97_RS26655 0.84 -0.3
255,125 + -0.7
255,126 - +0.1
255,207 - ABID97_RS26660 0.29 -0.4
255,207 - ABID97_RS26660 0.29 -0.5
255,230 + ABID97_RS26660 0.35 -0.1
255,249 - ABID97_RS26660 0.41 +0.5
255,272 + ABID97_RS26660 0.47 -0.5
255,272 + ABID97_RS26660 0.47 -0.6
255,272 + ABID97_RS26660 0.47 +0.0
255,276 - ABID97_RS26660 0.48 -0.1
255,315 - ABID97_RS26660 0.58 -0.8
255,315 - ABID97_RS26660 0.58 -0.2
255,315 - ABID97_RS26660 0.58 +0.4
255,318 - ABID97_RS26660 0.59 -0.4
255,507 + +0.0
255,507 + +0.7
255,670 + -0.0
255,671 - -1.8
256,181 - ABID97_RS26670 0.34 +0.1
256,237 - ABID97_RS26670 0.47 -0.5
256,256 + ABID97_RS26670 0.52 -0.7

Or see this region's nucleotide sequence