Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26035

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS26025 and ABID97_RS26030 are separated by 21 nucleotidesABID97_RS26030 and ABID97_RS26035 are separated by 19 nucleotidesABID97_RS26035 and ABID97_RS26040 are separated by 11 nucleotides ABID97_RS26025: ABID97_RS26025 - ABC transporter ATP-binding protein, at 130,197 to 130,919 _RS26025 ABID97_RS26030: ABID97_RS26030 - DUF1330 domain-containing protein, at 130,941 to 131,267 _RS26030 ABID97_RS26035: ABID97_RS26035 - GMC family oxidoreductase N-terminal domain-containing protein, at 131,287 to 132,954 _RS26035 ABID97_RS26040: ABID97_RS26040 - aldolase/citrate lyase family protein, at 132,966 to 133,955 _RS26040 Position (kb) 131 132 133Strain fitness (log2 ratio) -2 -1 0 1at 131.221 kb on - strand, within ABID97_RS26030at 132.175 kb on + strand, within ABID97_RS26035at 132.403 kb on + strand, within ABID97_RS26035at 132.403 kb on + strand, within ABID97_RS26035at 132.404 kb on - strand, within ABID97_RS26035at 132.404 kb on - strand, within ABID97_RS26035at 132.966 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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131,221 - ABID97_RS26030 0.86 -0.2
132,175 + ABID97_RS26035 0.53 +0.5
132,403 + ABID97_RS26035 0.67 -0.1
132,403 + ABID97_RS26035 0.67 -0.0
132,404 - ABID97_RS26035 0.67 -1.2
132,404 - ABID97_RS26035 0.67 -1.6
132,966 - -2.4

Or see this region's nucleotide sequence