Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25085

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25080 and ABID97_RS25085 are separated by 163 nucleotidesABID97_RS25085 and ABID97_RS25090 overlap by 4 nucleotidesABID97_RS25090 and ABID97_RS25095 overlap by 4 nucleotidesABID97_RS25095 and ABID97_RS25100 are separated by 31 nucleotides ABID97_RS25080: ABID97_RS25080 - MFS transporter, at 5,195,833 to 5,197,527 _RS25080 ABID97_RS25085: ABID97_RS25085 - 2-hydroxychromene-2-carboxylate isomerase, at 5,197,691 to 5,198,338 _RS25085 ABID97_RS25090: ABID97_RS25090 - DUF1289 domain-containing protein, at 5,198,335 to 5,198,604 _RS25090 ABID97_RS25095: ABID97_RS25095 - YbaK/EbsC family protein, at 5,198,601 to 5,199,089 _RS25095 ABID97_RS25100: ABID97_RS25100 - hydroxymethylglutaryl-CoA lyase, at 5,199,121 to 5,200,041 _RS25100 Position (kb) 5197 5198 5199Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5196.707 kb on + strand, within ABID97_RS25080at 5196.708 kb on - strand, within ABID97_RS25080at 5197.040 kb on + strand, within ABID97_RS25080at 5197.040 kb on + strand, within ABID97_RS25080at 5197.040 kb on + strand, within ABID97_RS25080at 5197.040 kb on + strand, within ABID97_RS25080at 5197.079 kb on + strand, within ABID97_RS25080at 5197.079 kb on + strand, within ABID97_RS25080at 5197.079 kb on + strand, within ABID97_RS25080at 5197.080 kb on - strand, within ABID97_RS25080at 5197.080 kb on - strand, within ABID97_RS25080at 5197.080 kb on - strand, within ABID97_RS25080at 5197.080 kb on - strand, within ABID97_RS25080at 5197.175 kb on + strand, within ABID97_RS25080at 5197.176 kb on - strand, within ABID97_RS25080at 5197.176 kb on - strand, within ABID97_RS25080at 5197.176 kb on - strand, within ABID97_RS25080at 5197.241 kb on + strand, within ABID97_RS25080at 5197.241 kb on + strand, within ABID97_RS25080at 5197.241 kb on + strand, within ABID97_RS25080at 5197.241 kb on + strand, within ABID97_RS25080at 5197.242 kb on - strand, within ABID97_RS25080at 5197.242 kb on - strand, within ABID97_RS25080at 5197.242 kb on - strand, within ABID97_RS25080at 5197.242 kb on - strand, within ABID97_RS25080at 5197.242 kb on - strand, within ABID97_RS25080at 5197.242 kb on - strand, within ABID97_RS25080at 5197.406 kb on + strandat 5197.406 kb on + strandat 5197.407 kb on - strandat 5197.407 kb on - strandat 5197.528 kb on - strandat 5197.528 kb on - strandat 5197.545 kb on + strandat 5197.545 kb on + strandat 5197.545 kb on + strandat 5197.546 kb on - strandat 5197.546 kb on - strandat 5197.635 kb on + strandat 5197.643 kb on - strandat 5198.085 kb on + strand, within ABID97_RS25085at 5198.085 kb on + strand, within ABID97_RS25085at 5198.085 kb on + strand, within ABID97_RS25085at 5198.086 kb on - strand, within ABID97_RS25085at 5198.086 kb on - strand, within ABID97_RS25085at 5198.235 kb on + strand, within ABID97_RS25085at 5198.247 kb on + strand, within ABID97_RS25085at 5198.247 kb on + strand, within ABID97_RS25085at 5198.248 kb on - strand, within ABID97_RS25085at 5198.320 kb on - strandat 5198.398 kb on + strand, within ABID97_RS25090at 5199.194 kb on + strandat 5199.195 kb on - strandat 5199.260 kb on + strand, within ABID97_RS25100at 5199.260 kb on + strand, within ABID97_RS25100at 5199.260 kb on + strand, within ABID97_RS25100at 5199.260 kb on + strand, within ABID97_RS25100at 5199.260 kb on + strand, within ABID97_RS25100at 5199.261 kb on - strand, within ABID97_RS25100at 5199.261 kb on - strand, within ABID97_RS25100at 5199.261 kb on - strand, within ABID97_RS25100

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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5,196,707 + ABID97_RS25080 0.52 -0.4
5,196,708 - ABID97_RS25080 0.52 -0.8
5,197,040 + ABID97_RS25080 0.71 -0.2
5,197,040 + ABID97_RS25080 0.71 -0.5
5,197,040 + ABID97_RS25080 0.71 -1.2
5,197,040 + ABID97_RS25080 0.71 +0.8
5,197,079 + ABID97_RS25080 0.74 +0.4
5,197,079 + ABID97_RS25080 0.74 +1.3
5,197,079 + ABID97_RS25080 0.74 +0.3
5,197,080 - ABID97_RS25080 0.74 +0.2
5,197,080 - ABID97_RS25080 0.74 +0.7
5,197,080 - ABID97_RS25080 0.74 -0.5
5,197,080 - ABID97_RS25080 0.74 -0.5
5,197,175 + ABID97_RS25080 0.79 +1.5
5,197,176 - ABID97_RS25080 0.79 -0.3
5,197,176 - ABID97_RS25080 0.79 -1.1
5,197,176 - ABID97_RS25080 0.79 +0.9
5,197,241 + ABID97_RS25080 0.83 -0.5
5,197,241 + ABID97_RS25080 0.83 +0.3
5,197,241 + ABID97_RS25080 0.83 -0.7
5,197,241 + ABID97_RS25080 0.83 +0.8
5,197,242 - ABID97_RS25080 0.83 +0.4
5,197,242 - ABID97_RS25080 0.83 +1.2
5,197,242 - ABID97_RS25080 0.83 -0.2
5,197,242 - ABID97_RS25080 0.83 -0.9
5,197,242 - ABID97_RS25080 0.83 -0.8
5,197,242 - ABID97_RS25080 0.83 +0.4
5,197,406 + +1.5
5,197,406 + +0.2
5,197,407 - +2.0
5,197,407 - -0.0
5,197,528 - +0.2
5,197,528 - +1.1
5,197,545 + +2.0
5,197,545 + +0.7
5,197,545 + -0.5
5,197,546 - -0.2
5,197,546 - +0.2
5,197,635 + +0.3
5,197,643 - -0.8
5,198,085 + ABID97_RS25085 0.61 -2.2
5,198,085 + ABID97_RS25085 0.61 -0.2
5,198,085 + ABID97_RS25085 0.61 -1.0
5,198,086 - ABID97_RS25085 0.61 -2.9
5,198,086 - ABID97_RS25085 0.61 +1.8
5,198,235 + ABID97_RS25085 0.84 -2.6
5,198,247 + ABID97_RS25085 0.86 -0.0
5,198,247 + ABID97_RS25085 0.86 -2.2
5,198,248 - ABID97_RS25085 0.86 -1.5
5,198,320 - -3.6
5,198,398 + ABID97_RS25090 0.23 +0.6
5,199,194 + -1.1
5,199,195 - -0.0
5,199,260 + ABID97_RS25100 0.15 +0.4
5,199,260 + ABID97_RS25100 0.15 +0.2
5,199,260 + ABID97_RS25100 0.15 -0.1
5,199,260 + ABID97_RS25100 0.15 -0.4
5,199,260 + ABID97_RS25100 0.15 -0.3
5,199,261 - ABID97_RS25100 0.15 -0.4
5,199,261 - ABID97_RS25100 0.15 -1.0
5,199,261 - ABID97_RS25100 0.15 -1.5

Or see this region's nucleotide sequence