Strain Fitness in Variovorax sp. OAS795 around ABID97_RS22620

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS22615 and ABID97_RS22620 are separated by 72 nucleotidesABID97_RS22620 and ABID97_RS22625 are separated by 172 nucleotides ABID97_RS22615: ABID97_RS22615 - tryptophan--tRNA ligase, at 4,682,513 to 4,683,841 _RS22615 ABID97_RS22620: ABID97_RS22620 - response regulator transcription factor, at 4,683,914 to 4,684,516 _RS22620 ABID97_RS22625: ABID97_RS22625 - HAMP domain-containing sensor histidine kinase, at 4,684,689 to 4,686,101 _RS22625 Position (kb) 4683 4684 4685Strain fitness (log2 ratio) -1 0 1 2at 4683.863 kb on - strandat 4683.923 kb on + strandat 4683.923 kb on + strandat 4683.923 kb on + strandat 4683.924 kb on - strandat 4683.924 kb on - strandat 4683.997 kb on + strand, within ABID97_RS22620at 4683.998 kb on - strand, within ABID97_RS22620at 4683.998 kb on - strand, within ABID97_RS22620at 4684.131 kb on - strand, within ABID97_RS22620at 4684.155 kb on - strand, within ABID97_RS22620at 4684.214 kb on + strand, within ABID97_RS22620at 4684.215 kb on - strand, within ABID97_RS22620at 4684.215 kb on - strand, within ABID97_RS22620at 4684.482 kb on - strandat 4684.514 kb on + strandat 4684.515 kb on - strandat 4684.633 kb on + strandat 4684.882 kb on + strand, within ABID97_RS22625at 4684.882 kb on + strand, within ABID97_RS22625at 4684.882 kb on + strand, within ABID97_RS22625at 4684.882 kb on + strand, within ABID97_RS22625at 4684.883 kb on - strand, within ABID97_RS22625at 4684.883 kb on - strand, within ABID97_RS22625at 4685.005 kb on + strand, within ABID97_RS22625at 4685.129 kb on - strand, within ABID97_RS22625

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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4,683,863 - -0.7
4,683,923 + +2.4
4,683,923 + +1.3
4,683,923 + +1.3
4,683,924 - +1.7
4,683,924 - +1.2
4,683,997 + ABID97_RS22620 0.14 +1.2
4,683,998 - ABID97_RS22620 0.14 +1.1
4,683,998 - ABID97_RS22620 0.14 +1.4
4,684,131 - ABID97_RS22620 0.36 +1.1
4,684,155 - ABID97_RS22620 0.40 +2.7
4,684,214 + ABID97_RS22620 0.50 +1.1
4,684,215 - ABID97_RS22620 0.50 +0.8
4,684,215 - ABID97_RS22620 0.50 +0.2
4,684,482 - +0.8
4,684,514 + +1.4
4,684,515 - +0.7
4,684,633 + +0.1
4,684,882 + ABID97_RS22625 0.14 +1.0
4,684,882 + ABID97_RS22625 0.14 +1.5
4,684,882 + ABID97_RS22625 0.14 +0.9
4,684,882 + ABID97_RS22625 0.14 +0.9
4,684,883 - ABID97_RS22625 0.14 +1.2
4,684,883 - ABID97_RS22625 0.14 +1.1
4,685,005 + ABID97_RS22625 0.22 +1.0
4,685,129 - ABID97_RS22625 0.31 +0.7

Or see this region's nucleotide sequence