Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS18755 and ABID97_RS18760 overlap by 1 nucleotides ABID97_RS18760 and ABID97_RS18765 are separated by 20 nucleotides ABID97_RS18765 and ABID97_RS18770 are separated by 69 nucleotides ABID97_RS18770 and ABID97_RS18775 are separated by 57 nucleotides
ABID97_RS18755: ABID97_RS18755 - aconitase family protein, at 3,863,560 to 3,864,414
_RS18755
ABID97_RS18760: ABID97_RS18760 - 3-isopropylmalate dehydratase small subunit, at 3,864,414 to 3,865,050
_RS18760
ABID97_RS18765: ABID97_RS18765 - hypothetical protein, at 3,865,071 to 3,865,277
_RS18765
ABID97_RS18770: ABID97_RS18770 - FAD-dependent oxidoreductase, at 3,865,347 to 3,866,582
_RS18770
ABID97_RS18775: ABID97_RS18775 - acetyl-CoA acetyltransferase, at 3,866,640 to 3,867,809
_RS18775
Position (kb)
3865
3866
3867 Strain fitness (log2 ratio)
-1
0
1 at 3864.554 kb on + strand, within ABID97_RS18760 at 3864.762 kb on - strand, within ABID97_RS18760 at 3864.762 kb on - strand, within ABID97_RS18760 at 3864.762 kb on - strand, within ABID97_RS18760 at 3864.875 kb on - strand, within ABID97_RS18760 at 3865.174 kb on + strand, within ABID97_RS18765 at 3865.174 kb on + strand, within ABID97_RS18765 at 3865.175 kb on - strand, within ABID97_RS18765 at 3865.175 kb on - strand, within ABID97_RS18765 at 3865.175 kb on - strand, within ABID97_RS18765 at 3865.175 kb on - strand, within ABID97_RS18765 at 3866.435 kb on - strand, within ABID97_RS18770 at 3866.435 kb on - strand, within ABID97_RS18770 at 3866.584 kb on - strand at 3866.602 kb on + strand at 3866.638 kb on + strand at 3866.665 kb on + strand at 3866.666 kb on - strand at 3866.917 kb on + strand, within ABID97_RS18775 at 3866.918 kb on - strand, within ABID97_RS18775 at 3867.347 kb on - strand, within ABID97_RS18775 at 3867.413 kb on - strand, within ABID97_RS18775
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 3,864,554 + ABID97_RS18760 0.22 -0.0 3,864,762 - ABID97_RS18760 0.55 +0.2 3,864,762 - ABID97_RS18760 0.55 -0.7 3,864,762 - ABID97_RS18760 0.55 +0.1 3,864,875 - ABID97_RS18760 0.72 +0.2 3,865,174 + ABID97_RS18765 0.50 -0.4 3,865,174 + ABID97_RS18765 0.50 +0.1 3,865,175 - ABID97_RS18765 0.50 +0.9 3,865,175 - ABID97_RS18765 0.50 -0.3 3,865,175 - ABID97_RS18765 0.50 -0.1 3,865,175 - ABID97_RS18765 0.50 -0.2 3,866,435 - ABID97_RS18770 0.88 -0.2 3,866,435 - ABID97_RS18770 0.88 -0.5 3,866,584 - -0.5 3,866,602 + +1.5 3,866,638 + -0.7 3,866,665 + +0.5 3,866,666 - +0.1 3,866,917 + ABID97_RS18775 0.24 +0.3 3,866,918 - ABID97_RS18775 0.24 -1.3 3,867,347 - ABID97_RS18775 0.60 +0.5 3,867,413 - ABID97_RS18775 0.66 +0.5
Or see this region's nucleotide sequence