Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS17985 and ABID97_RS17990 are separated by 61 nucleotides ABID97_RS17990 and ABID97_RS17995 are separated by 31 nucleotides ABID97_RS17995 and ABID97_RS18000 are separated by 25 nucleotides ABID97_RS18000 and ABID97_RS18005 are separated by 31 nucleotides
ABID97_RS17985: ABID97_RS17985 - DNA polymerase III subunit alpha, at 3,714,753 to 3,718,271
_RS17985
ABID97_RS17990: ABID97_RS17990 - sulfurtransferase, at 3,718,333 to 3,719,124
_RS17990
ABID97_RS17995: ABID97_RS17995 - pirin family protein, at 3,719,156 to 3,720,079
_RS17995
ABID97_RS18000: ABID97_RS18000 - flavodoxin family protein, at 3,720,105 to 3,720,656
_RS18000
ABID97_RS18005: ABID97_RS18005 - DoxX family protein, at 3,720,688 to 3,721,098
_RS18005
Position (kb) 3719
3720
3721 Strain fitness (log2 ratio) -1
0
1 at 3718.283 kb on - strand at 3718.283 kb on - strand at 3718.283 kb on - strand at 3718.319 kb on + strand at 3718.320 kb on - strand at 3719.000 kb on - strand, within ABID97_RS17990 at 3719.322 kb on + strand, within ABID97_RS17995 at 3719.322 kb on + strand, within ABID97_RS17995 at 3719.323 kb on - strand, within ABID97_RS17995 at 3719.542 kb on - strand, within ABID97_RS17995 at 3719.638 kb on + strand, within ABID97_RS17995 at 3719.639 kb on - strand, within ABID97_RS17995 at 3719.727 kb on + strand, within ABID97_RS17995 at 3719.727 kb on + strand, within ABID97_RS17995 at 3719.727 kb on + strand, within ABID97_RS17995 at 3720.107 kb on - strand at 3720.107 kb on - strand at 3720.238 kb on + strand, within ABID97_RS18000 at 3720.239 kb on - strand, within ABID97_RS18000 at 3720.334 kb on + strand, within ABID97_RS18000 at 3720.335 kb on - strand, within ABID97_RS18000 at 3720.419 kb on - strand, within ABID97_RS18000 at 3720.478 kb on + strand, within ABID97_RS18000 at 3720.478 kb on + strand, within ABID97_RS18000 at 3720.479 kb on - strand, within ABID97_RS18000 at 3720.777 kb on + strand, within ABID97_RS18005 at 3720.965 kb on + strand, within ABID97_RS18005
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 3,718,283 - +0.6 3,718,283 - +0.2 3,718,283 - -0.5 3,718,319 + -0.2 3,718,320 - +0.9 3,719,000 - ABID97_RS17990 0.84 -0.4 3,719,322 + ABID97_RS17995 0.18 +0.3 3,719,322 + ABID97_RS17995 0.18 -1.1 3,719,323 - ABID97_RS17995 0.18 -0.5 3,719,542 - ABID97_RS17995 0.42 -0.1 3,719,638 + ABID97_RS17995 0.52 -0.4 3,719,639 - ABID97_RS17995 0.52 +0.6 3,719,727 + ABID97_RS17995 0.62 +0.6 3,719,727 + ABID97_RS17995 0.62 +0.6 3,719,727 + ABID97_RS17995 0.62 -0.5 3,720,107 - -0.5 3,720,107 - -0.7 3,720,238 + ABID97_RS18000 0.24 -0.4 3,720,239 - ABID97_RS18000 0.24 +0.5 3,720,334 + ABID97_RS18000 0.41 -0.4 3,720,335 - ABID97_RS18000 0.42 -0.0 3,720,419 - ABID97_RS18000 0.57 -1.0 3,720,478 + ABID97_RS18000 0.68 -0.2 3,720,478 + ABID97_RS18000 0.68 +1.1 3,720,479 - ABID97_RS18000 0.68 +0.0 3,720,777 + ABID97_RS18005 0.22 +0.4 3,720,965 + ABID97_RS18005 0.67 +0.4
Or see this region's nucleotide sequence