Strain Fitness in Variovorax sp. OAS795 around ABID97_RS17715

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS17710 and ABID97_RS17715 overlap by 4 nucleotidesABID97_RS17715 and ABID97_RS17720 overlap by 4 nucleotides ABID97_RS17710: ABID97_RS17710 - efflux transporter outer membrane subunit, at 3,658,397 to 3,659,890 _RS17710 ABID97_RS17715: ABID97_RS17715 - efflux RND transporter periplasmic adaptor subunit, at 3,659,887 to 3,661,110 _RS17715 ABID97_RS17720: ABID97_RS17720 - efflux RND transporter permease subunit, at 3,661,107 to 3,664,217 _RS17720 Position (kb) 3659 3660 3661 3662Strain fitness (log2 ratio) -1 0 1at 3658.961 kb on + strand, within ABID97_RS17710at 3659.303 kb on + strand, within ABID97_RS17710at 3659.303 kb on + strand, within ABID97_RS17710at 3659.303 kb on + strand, within ABID97_RS17710at 3659.654 kb on + strand, within ABID97_RS17710at 3659.655 kb on - strand, within ABID97_RS17710at 3659.655 kb on - strand, within ABID97_RS17710at 3659.687 kb on + strand, within ABID97_RS17710at 3660.712 kb on + strand, within ABID97_RS17715at 3660.712 kb on + strand, within ABID97_RS17715at 3660.713 kb on - strand, within ABID97_RS17715

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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3,658,961 + ABID97_RS17710 0.38 -0.7
3,659,303 + ABID97_RS17710 0.61 -0.0
3,659,303 + ABID97_RS17710 0.61 +0.6
3,659,303 + ABID97_RS17710 0.61 -0.6
3,659,654 + ABID97_RS17710 0.84 +0.8
3,659,655 - ABID97_RS17710 0.84 -0.9
3,659,655 - ABID97_RS17710 0.84 +0.0
3,659,687 + ABID97_RS17710 0.86 +0.4
3,660,712 + ABID97_RS17715 0.67 -1.0
3,660,712 + ABID97_RS17715 0.67 +0.5
3,660,713 - ABID97_RS17715 0.67 +0.0

Or see this region's nucleotide sequence