Strain Fitness in Variovorax sp. OAS795 around ABID97_RS17685

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS17680 and ABID97_RS17685 are separated by 154 nucleotidesABID97_RS17685 and ABID97_RS17690 overlap by 4 nucleotidesABID97_RS17690 and ABID97_RS17695 are separated by 173 nucleotides ABID97_RS17680: ABID97_RS17680 - branched-chain amino acid ABC transporter permease, at 3,651,799 to 3,652,782 _RS17680 ABID97_RS17685: ABID97_RS17685 - ABC transporter ATP-binding protein, at 3,652,937 to 3,653,656 _RS17685 ABID97_RS17690: ABID97_RS17690 - ABC transporter ATP-binding protein, at 3,653,653 to 3,654,417 _RS17690 ABID97_RS17695: ABID97_RS17695 - substrate-binding domain-containing protein, at 3,654,591 to 3,655,778 _RS17695 Position (kb) 3652 3653 3654Strain fitness (log2 ratio) -1 0 1at 3652.247 kb on + strand, within ABID97_RS17680at 3652.403 kb on + strand, within ABID97_RS17680at 3652.934 kb on - strandat 3653.412 kb on + strand, within ABID97_RS17685at 3653.413 kb on - strand, within ABID97_RS17685at 3653.610 kb on + strandat 3653.610 kb on + strandat 3653.639 kb on + strandat 3653.640 kb on - strandat 3653.640 kb on - strandat 3653.681 kb on + strandat 3654.290 kb on + strand, within ABID97_RS17690at 3654.290 kb on + strand, within ABID97_RS17690

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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3,652,247 + ABID97_RS17680 0.46 +0.4
3,652,403 + ABID97_RS17680 0.61 -0.3
3,652,934 - -0.3
3,653,412 + ABID97_RS17685 0.66 +0.7
3,653,413 - ABID97_RS17685 0.66 +0.6
3,653,610 + +0.1
3,653,610 + +0.4
3,653,639 + +0.2
3,653,640 - +1.4
3,653,640 - +0.0
3,653,681 + +0.4
3,654,290 + ABID97_RS17690 0.83 +0.0
3,654,290 + ABID97_RS17690 0.83 +0.3

Or see this region's nucleotide sequence