Strain Fitness in Variovorax sp. OAS795 around ABID97_RS15325

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS15315 and ABID97_RS15320 are separated by 54 nucleotidesABID97_RS15320 and ABID97_RS15325 overlap by 4 nucleotidesABID97_RS15325 and ABID97_RS15330 are separated by 59 nucleotidesABID97_RS15330 and ABID97_RS15335 overlap by 47 nucleotides ABID97_RS15315: ABID97_RS15315 - thiazole synthase, at 3,169,090 to 3,169,893 _RS15315 ABID97_RS15320: ABID97_RS15320 - sulfur carrier protein ThiS, at 3,169,948 to 3,170,151 _RS15320 ABID97_RS15325: ABID97_RS15325 - FAD-dependent oxidoreductase, at 3,170,148 to 3,171,239 _RS15325 ABID97_RS15330: ABID97_RS15330 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 3,171,299 to 3,172,159 _RS15330 ABID97_RS15335: ABID97_RS15335 - cytosine permease, at 3,172,113 to 3,173,453 _RS15335 Position (kb) 3170 3171 3172Strain fitness (log2 ratio) -1 0 1 2at 3169.275 kb on - strand, within ABID97_RS15315at 3169.481 kb on + strand, within ABID97_RS15315at 3169.481 kb on + strand, within ABID97_RS15315at 3169.559 kb on + strand, within ABID97_RS15315at 3169.820 kb on + strandat 3169.933 kb on + strandat 3170.141 kb on + strandat 3170.500 kb on + strand, within ABID97_RS15325at 3170.501 kb on - strand, within ABID97_RS15325

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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3,169,275 - ABID97_RS15315 0.23 +1.0
3,169,481 + ABID97_RS15315 0.49 +0.6
3,169,481 + ABID97_RS15315 0.49 -0.5
3,169,559 + ABID97_RS15315 0.58 +0.5
3,169,820 + +0.3
3,169,933 + +0.5
3,170,141 + +2.7
3,170,500 + ABID97_RS15325 0.32 +0.0
3,170,501 - ABID97_RS15325 0.32 -0.8

Or see this region's nucleotide sequence